Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01891 ATGGCGCCGAATCCAAGAGTGACAGCCGCGTTTTCGGCAATGGCAAATATCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAGCTGCTTAAATTGTATGATAAAAACTGGGAACTCATTGAAGAAGAGAGTTACAGGGCTCTGGCTGATGCAATATTTGAGGAGGAAGAAAATAAGTTGCTGGAGCCAGACCAGAGTAACAAAAACAAGAAGGATAGAGAAGTGGACGATGAAGAAGCTCATATGCTTGAGGAGCCTTTACGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAGGAGGGTCAATCCTCACGCCCTCTAACTAGTCCTGTTCACAACTCAGCTGCCTTTCCGTTGAAAATTCCAAAATTGGAAGATGGCACAGTGCCTGAAATTAGTCCCAGGCTGCAGCCTCAAAGCAGGGCTGCATTATCTGATGGAAATGCAAGGAATGATGCTCCTCATGTTCCCTCACAAGATGTTATTGTCGACAAGGGAAAGCAACCTGTATCACCTCAAGTTACAGCCAGAGGGGGAAGGTCTATGTCTGACCATACTTCCCTTGCAGAACCACTGAAAGAGTCAGCAGTTGAACCACGAGCTGCTCCTTTGGTCAATAACAAAATGACTGTTCCATTTACTTTCATCAAGCCCAAGGATGAGCCTGTTGATGATTTGCCAGATTGTGACATTCCCCTAGCTGTGATTCCTTCTGAACCATCAAGTGGAGGAGACTCTCTAATGGGTGCAGCTGAAAAGAAAGATGGCCACGATACTATGGTATCGCAGTGTAGAGATGAAGACGTTGAGCATGAATATATAATTTCGTCCTCAATTGAAGAACCAACTTCTGATGTAGATGTAGCATTGTCATCTGTAGGAGAGGAACAATGTGTAAAGATAACACAAACTGATGATGTTTCAAAGGAATCTGAGACCGATGTTTCACCTATTGTGAGGGGAAATAAAGATCCAGTCATTGCAAATGGGTCAATCAGTGTTAGGTCTTCTCCTTCCTTGGCTGAACCTGAAGTTCTTAGTTCTCTTCCCTACCCAAGAGACCAAGATGATTCTGTACTAGCTTCCAAGAAGGTTGGGACGAATGGTTTCTTACAAAGTACTGGTGGGAAGGAGCCAGAGGATCTTGTATCCGCATATTCAGGTACCTTAGTGGTTGTTCCAAAATGTCAACTTACAACTGAAAATAATGCTAGGGCTGTTCAAGATGTTAATGACCTAGCAAAGGGTGAAGAAAGAGTGAATATTTCATGGGTGAATAACACTACTAATGATCTCCCTCCATCCTTTCACTACATACCCCAAAACCTTGTGTACCGAGATGCTTGTGTTAATTTTTCTCTATCTCGTATTGGGAATGGGGATTGTTGTTCAACTTGTAAGGGCAATTGTGTATTGTCATCTAAACCATGTCCCTGTACATATAAAACTGGGGGTGAATTTGCTTTTACTGCACAAGGACTACTAAAGGAAGCGTTCTTAGATGAGTGTATTGCCATCAACCGTGATTCCCAAAATTATTTCTATTGCAAAGCCTGTCCGTTCGAACGATCAAAGAATGATGATTGTTTAGAACCATGTAAAGGACACCTAAAGCAGAAATTTATCAAAGAGTGCTGGAGCAAATGTGGCTGCGGAAAACAGTGTGGCAATCGGGTTGTCCAGCGTGGAATAAGTTGCAAGTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCACATTTGTATGCGAGTTCATTGGGGAAATTTTAACTGTCAAAGAGTTGCACGAGAGGAACATGAAAAATCCGAAAAGTGGGAAATATACATTCCCAGTTTTATTGGATGCAGATTGGGATTTAGGAGTTGTGAAGGATAGGGAAGCTCTTTGCTTATATGCGGCATCATATGGAAATGCTGCTAGGTTTATTAATCACAGATGCTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGTGCCCAACTCATCAGTACTATCATTTTGCGTTCTTTGCATCCAGAAAAATAGCAGCCCAAGAAGAACTCACTTGGGATTATGGCATCAACTTTGATGATGACGATGAGTCTGTTGAGCTTTTCCGGTGCAGATGTGGCAGTAAATTCTGCAGGAATATCAAGCGATCAAATAGATCCCTCAGATCGTCAGTTGCATGA 2214 0.4264 MAPNPRVTAAFSAMANIGIHESKVKPVLKKLLKLYDKNWELIEEESYRALADAIFEEEENKLLEPDQSNKNKKDREVDDEEAHMLEEPLRPLKRLRLRGQEGQSSRPLTSPVHNSAAFPLKIPKLEDGTVPEISPRLQPQSRAALSDGNARNDAPHVPSQDVIVDKGKQPVSPQVTARGGRSMSDHTSLAEPLKESAVEPRAAPLVNNKMTVPFTFIKPKDEPVDDLPDCDIPLAVIPSEPSSGGDSLMGAAEKKDGHDTMVSQCRDEDVEHEYIISSSIEEPTSDVDVALSSVGEEQCVKITQTDDVSKESETDVSPIVRGNKDPVIANGSISVRSSPSLAEPEVLSSLPYPRDQDDSVLASKKVGTNGFLQSTGGKEPEDLVSAYSGTLVVVPKCQLTTENNARAVQDVNDLAKGEERVNISWVNNTTNDLPPSFHYIPQNLVYRDACVNFSLSRIGNGDCCSTCKGNCVLSSKPCPCTYKTGGEFAFTAQGLLKEAFLDECIAINRDSQNYFYCKACPFERSKNDDCLEPCKGHLKQKFIKECWSKCGCGKQCGNRVVQRGISCKLQVFLTSDGKGWGLRTLEDLPKGTFVCEFIGEILTVKELHERNMKNPKSGKYTFPVLLDADWDLGVVKDREALCLYAASYGNAARFINHRCLDANLIEIPVEVECPTHQYYHFAFFASRKIAAQEELTWDYGINFDDDDESVELFRCRCGSKFCRNIKRSNRSLRSSVA 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01891 737 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Phco2g01891 737 CDD SET_SETDB-like 435 700 - -
Phco2g01891 737 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 733 - -
Phco2g01891 737 SMART preset_2 411 551 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco2g01891 737 Gene3D SET domain 414 725 IPR046341 -
Phco2g01891 737 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 737 IPR025776 -
Phco2g01891 737 MobiDBLite consensus disorder prediction 304 323 - -
Phco2g01891 737 Gene3D - 1 60 IPR043017 -
Phco2g01891 737 MobiDBLite consensus disorder prediction 304 318 - -
Phco2g01891 737 ProSiteProfiles Pre-SET domain profile. 463 564 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco2g01891 737 SUPERFAMILY SET domain 421 723 IPR046341 -
Phco2g01891 737 MobiDBLite consensus disorder prediction 61 94 - -
Phco2g01891 737 SMART set_7 567 706 IPR001214 GO:0005515
Phco2g01891 737 Pfam Pre-SET motif 415 559 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco2g01891 737 ProSiteProfiles SET domain profile. 567 700 IPR001214 GO:0005515
Phco2g01891 737 MobiDBLite consensus disorder prediction 126 196 - -
Phco2g01891 737 Pfam SET domain 579 700 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01891 Phco-Chr2 49521104 49526210 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco2g01891 Pre-SET 9.7e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01891 2 49521104 49526210 Phco2g01891 2 49521104 49526210 ECH
Phco2g01891 2 49521104 49526210 Phco6g00433 6 4101136 4103046 PCT
Phco6g01089 6 10979817 10984854 Phco2g01891 2 49521104 49526210 PCT