Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01887 ATGCTATGTAAAATATATAAGAGCAATTTTCAAAGTGTTGATGACATGCTTTTCAATATGTCCTACGTTAGAATCAGACATTATTACGTTGTGGAATGTACATTACATGGTACTACCACACCACCAATTCAATCACCGAGAGTCACTTCACGCGCCACGCTGGCGCGTACGATTGGTTCCGCCTATTCCTCCAAAAAGGAGCCAAAGCCAAAGCGCATTCGCTTTGAGTTTGCATGCGTCTTGCTATGCATATCTTGTGAAGATTTGTTTGTGGAGTGTGAATTGCGTCCTAAGGGGAAAATTATGGAAGCACGTCCTACTTTCTCTATCATGGGGATGTCTGAAGCATTTCCTTCATCGTTGCCTGTCGTTCCAATGCCTCGAGAAGGGACATGCCCCAAATTATCTGATTCTCAGCCAGCATTTTTGGAAAAAGGGCTTAAACCAAAACCTTTTACTCATTCGAATCATTTAACTACCAGTGGTGCTGTCGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGACCTTCATCACTCATCCTTTTCATCTCATGAAAAGGACCCTAGAAATACTCCTTTTATTTCACAGTCATTGAGTAACATGGCTTCACTGCCCTTATCTTATTCTTCAAATAGTGGACCAATAGCTTCTACAACATCAACACCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCCCTGCCTAGCTTTCTTGATTTCCCTGCCAATACCTCAATTGATAATAGTCAAGTAGAAAGCAGTGCCTGCAATATTATGGCAACTGAAGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGTTAATCAGTGATGATGATCCATTGACTTCTAATTGGAATGAGCTTCTTGCTGACAACATTCAAGATCTCGAACCAAAGGCCTCAAATTCATCTTCACAACTTCCAATAGGACACCAATCCCAAAGCTATCAACAACTTAATGTTTCATCTGGAGAAAATCGTATTGGTGTTGCCCCATCTTCGTCAGCAAATTCCGTGCCTTCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTTATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCCGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTATGTCCAATTGAAGAGATATCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTCGAGATTCAAAGAAATCTACAGTTACGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAACAGTGCAAATCTGGCATTGAAACATTTAAGGCATCATCGTCTGCTGTTGAGAGCCCATCTGGAGTTTCTTCTGATGCCATGAAAGATTCTGCGGCCAAAACTGAATCAGAAACTGTCAAAGTGGACCTTTGCGAGTCAGGACCTGATCAAGCCAATGGCAGTACCACAGTTGAGGAAAGCTCATCGAAAGTGGATGAGAAGCAGGATCCTCCTGAATGTAAAGCTTCTGAGAATCCTAAGCAACATGCTAGTGAAGATAGTTCTAAAGCCCCAAAGCGTCCAAGGACTGAGGATTAA 1728 0.4265 MLCKIYKSNFQSVDDMLFNMSYVRIRHYYVVECTLHGTTTPPIQSPRVTSRATLARTIGSAYSSKKEPKPKRIRFEFACVLLCISCEDLFVECELRPKGKIMEARPTFSIMGMSEAFPSSLPVVPMPREGTCPKLSDSQPAFLEKGLKPKPFTHSNHLTTSGAVGHMFSSSPGYSTDLHHSSFSSHEKDPRNTPFISQSLSNMASLPLSYSSNSGPIASTTSTPYSNGNSVSWHTDSLPSFLDFPANTSIDNSQVESSACNIMATEEYSKRNDWQEWADQLISDDDPLTSNWNELLADNIQDLEPKASNSSSQLPIGHQSQSYQQLNVSSGENRIGVAPSSSANSVPSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLCPIEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSSAVESPSGVSSDAMKDSAAKTESETVKVDLCESGPDQANGSTTVEESSSKVDEKQDPPECKASENPKQHASEDSSKAPKRPRTED 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01887 575 MobiDBLite consensus disorder prediction 489 575 - -
Phco2g01887 575 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 347 406 IPR017930 -
Phco2g01887 575 MobiDBLite consensus disorder prediction 489 506 - -
Phco2g01887 575 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 313 559 IPR044848 GO:0003700
Phco2g01887 575 Pfam MYB-CC type transfactor, LHEQLE motif 434 481 IPR025756 -
Phco2g01887 575 Gene3D - 348 407 - -
Phco2g01887 575 Coils Coil 437 457 - -
Phco2g01887 575 MobiDBLite consensus disorder prediction 537 575 - -
Phco2g01887 575 SUPERFAMILY Homeodomain-like 347 403 IPR009057 -
Phco2g01887 575 NCBIfam myb-like DNA-binding domain, SHAQKYF class 349 403 IPR006447 GO:0003677
Phco2g01887 575 FunFam Myb family transcription factor 348 406 - -
Phco2g01887 575 Pfam Myb-like DNA-binding domain 351 402 IPR001005 -
Phco2g01887 575 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01887 Phco-Chr2 49498842 49511148 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco2g01887 Myb_DNA-binding 1.1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01887 2 49498842 49511148 Phco2g01887 2 49498842 49511148 ECH
Phco2g01887 2 49498842 49511148 Phco6g01085 6 10944560 10953965 ECH
Phco2g01887 2 49498842 49511148 Phco6g01085 6 10944560 10953965 PCT