Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01886 ATGACAACTTTCCAAAAGGTTCATGCTCTAGTGTTTCATATACTCTTGCTTTTTTTGCTTCCTTTGAGAATCGTTTCATCACCAAGAGCAGAAGCAGAGGCCCTTGTCAAATGGAAAAACACTCTATCCCCACCTCTTCCTCCTTCTCTAAACTCATGGTCCTTCACCAACCTTCCCAACCTTTGCATTTGGGATGCCATTGTTTGTGACAACACCAACACAACAGTCTTAGAGATAAACTTGTCTGGTGCCAATCTCACTGGGACTCTCTCTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATGCCAACAATTTTGAGGGGTCAATACCATCCACAATTGGCAAACTCTCCAAGCTCACACTATTGGACTTGGGGAACAACTTATTTGATCACACTCTGCCTTATGAGCTGGGTTGGCTAATGGAGCTTCAATATCTCAGTCTTTACAACAACAATCTTAATGGCATCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTATATGGACCTTGGTTCAAATTACTTTATAACTCCTCCTGACTGGTCCCCATATTCATGCTTGCCTTCCTTGACACGCCTTGCTTTACATCAAAGTCCATCATTGACTGGTGAATTCCCAAGTTTCATACTGAAGTGCCATAACTTGACATACCTTGACATCTCTCAGAATGGTTGGAATGGCACTATACCAGAATCCTTGTATAGCAATTTGGCCAAGCTAGAATACCTCAACCTCACCAACTGTGGGTTCAAAGGAAAACTGTCACCCAACATGTCCATGCTTTCTAATCTCAAAGAACTTCGTATAGGTAATAACATGTTTAATGGTCCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAACTGTATAACATTTCTGCCCATGGCAAAATTCCTTCTTCCATAGGCCAACTCACGGAGCTATGGCATCTTGATCTTAGTATAAATCATTTTAACTCTACAATCCCTTCTGAGCTTGGCCTGTGCACAAATCTATCCTTCTTGAGTTTAGCAGTGAATGATTTGACTGGTCCTCTGCCCTTCTCATTAGCTAGTCTGTCTAGAATATCAGAATTGGGGATATCAGATAATTCATTTTCTGGTGAACTTTCTCCTTCACTCATCTCTAACTGGACGCAGTTGATCTCCTTGCAACTCCAAAACAACAACTTTACAGGAAAGGCCACCGATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTTGGAAGTGTTTATAGAGCACAATTACTCACAGGTCAAGTTGTTGCTGTCAAGAGGCTCAACGTATCAGACTCTGATGACATTCCAGCAATGAAGCGCCAGAGCTTTTTGAATGAGATAAAATCACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAATATGTAGACAGAGGAAGTTTGGCAAAAGTGTTATATAGAGAGGAAGAAAATTTGGAGCTAAGGTGGGGCACAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTGCACACTGATTGCTCCCCACCAATCGTGCACCGGGATGTAACACTGAATAACATATTACTAGACTCCGACTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGCTCAGACACTTCAACTTGGACCTCAGTTGCCGGATCCTATGGTTACATGGCTCCAGAGCTAGCACAAACTAGGAGAGTGACTGAGAAGTGCGACGTGTATAGTTTTGGGGTGGTGGTGATGGAGATAATGATGGGAAAGCATCCTGGAGAACTCTTGGGTACACTGTCTTCGAACAAGTATTTGTCATCAAAGGAGGAGGAACCACATGTGCTGTTGAAGGACGTGCTAGACCAAAGGTTTCCGCCTCCAACAGGCCAACTAGCAGAAGCAGTGGTGTTCACAATGACTATAGCTTTGGCATGCACACGTGCGGCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAGCTATCGGCTACTACTCAGGCTTATCTTTCCCTGCCATTTGGCATCATAACCATGAACAAGCTTAGAGGGTTATAG 2130 0.4347 MTTFQKVHALVFHILLLFLLPLRIVSSPRAEAEALVKWKNTLSPPLPPSLNSWSFTNLPNLCIWDAIVCDNTNTTVLEINLSGANLTGTLSALDFASLPNLTQLNLNANNFEGSIPSTIGKLSKLTLLDLGNNLFDHTLPYELGWLMELQYLSLYNNNLNGIIPYQLMNLPKVWYMDLGSNYFITPPDWSPYSCLPSLTRLALHQSPSLTGEFPSFILKCHNLTYLDISQNGWNGTIPESLYSNLAKLEYLNLTNCGFKGKLSPNMSMLSNLKELRIGNNMFNGPVPTEIGLISGLQILELYNISAHGKIPSSIGQLTELWHLDLSINHFNSTIPSELGLCTNLSFLSLAVNDLTGPLPFSLASLSRISELGISDNSFSGELSPSLISNWTQLISLQLQNNNFTGKATDDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNVSDSDDIPAMKRQSFLNEIKSLTGVRHRNIIKLYGFCSCRGQMFLVYEYVDRGSLAKVLYREEENLELRWGTRLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTRRVTEKCDVYSFGVVVMEIMMGKHPGELLGTLSSNKYLSSKEEEPHVLLKDVLDQRFPPPTGQLAEAVVFTMTIALACTRAAPESRPIMRAVAQELSATTQAYLSLPFGIITMNKLRGL 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01886 709 Gene3D Ribonuclease Inhibitor 303 418 IPR032675 -
Phco2g01886 709 ProSitePatterns Tyrosine protein kinases specific active-site signature. 537 549 IPR008266 GO:0004672|GO:0006468
Phco2g01886 709 Gene3D Ribonuclease Inhibitor 28 192 IPR032675 -
Phco2g01886 709 ProSiteProfiles Protein kinase domain profile. 411 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01886 709 Gene3D Transferase(Phosphotransferase) domain 1 493 695 - -
Phco2g01886 709 FunFam MDIS1-interacting receptor like kinase 2 492 692 - -
Phco2g01886 709 SUPERFAMILY Protein kinase-like (PK-like) 387 686 IPR011009 -
Phco2g01886 709 Gene3D Phosphorylase Kinase; domain 1 419 492 - -
Phco2g01886 709 SMART LRR_typ_2 98 121 IPR003591 -
Phco2g01886 709 SMART LRR_typ_2 122 146 IPR003591 -
Phco2g01886 709 SMART LRR_typ_2 317 341 IPR003591 -
Phco2g01886 709 CDD STKc_IRAK 417 686 - -
Phco2g01886 709 ProSitePatterns Protein kinases ATP-binding region signature. 417 439 IPR017441 GO:0005524
Phco2g01886 709 PANTHER UNNAMED PRODUCT 96 617 - -
Phco2g01886 709 Gene3D Ribonuclease Inhibitor 193 302 IPR032675 -
Phco2g01886 709 Pfam Protein kinase domain 413 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01886 709 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Phco2g01886 709 FunFam Leucine-rich repeat receptor protein kinase MSP1 388 491 - -
Phco2g01886 709 FunFam MDIS1-interacting receptor like kinase 2 193 386 - -
Phco2g01886 709 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Phco2g01886 709 SUPERFAMILY RNI-like 78 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01886 Phco-Chr2 49493464 49497407 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco2g01886 Pkinase 8.2e-47 CL0016