Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01885 ATGACAAATTTTCAAAAGGTTCATACTCTACTTCTTCCTATTCTCTTTCTATGTTTGCTTCCATTGAAAATTGCTTCATCATCAAGAGCAGAAGCAGAAGCCCTTCTCAAATGGAAAAACACTCTATCCCCACCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCACCAACCTTCCCAACCTTTGCATTTGGGATGCCATTGTTTGTGACAACACCAACACAACAGTCTCAGAGATAAACTTGTCTGGTGCCAATCTCACTGGGACTATCACTGTCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAAATCAACCTCGATGCCAACCGTTTTGGTGGGTCAATACCATCAGCAATTGGTAACCTCTCCAAGCTCACACTGTTGAACTTGGGGAACAACTTACTTGAAAACACACTGCCTGATGAACTAGGGCAGCTAAGGGAGCTTCAATATCTCAGTCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCAAATTACTTTATAACTCCTCCTGACTGGTCCCTATATTCATGCTTGCCTTCCTTGAGACGCCTTGCTTTACATCTAAATCCATCATTGACTGGTGAATTCCCAAGTTTCATACTGAAGTGCCATAACTTGACATACCTGGACATCTCTCAGAATGGATGGAATGGCACTATACCAGAATCCTTGTATAGCAATTTGGGCAAGCTAGAATACCTCAACCTCACCAACTGTAGGTTTGAAGGAAAACTATCACCCAACTTATCCATGCTTTCTAATCTCAAAGAACTTCGTATAGGTAATAACATGTTTAATGGTCCTGTTCCCTCTGAGATAGGACTGATATCTGGGCTTCAAATTCTTGAACTGCATAACATTTCTGCCCGTGGAAAAATTCCTTCTTCCATAGGCCAACTCAGGGAGCTATGGCATCTTGATCTTAGTGTAAATTTTTTTAACTCTACAATCCCTTCTGAGCTTGGCCTATGCACAAATCTATCCTTCTTGAGTTTATCAGAGAATGATTTGAGTGGTCCTCTGCCCTTGTCATTAGCTAGTCTGTCTAGAATATCAGAATTGGGGATATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTTCACTTATCTCTAACTGGACCCAGTTGATCTCCTTGCAAATCCAAAACAATAACTTTACAGGAAAGCTTCCTACACATATTGGCCTGTTGAAAAAAATTAACTTCCTCTATCTGTACAATAATCACTTCTCTGGTCCCATTCCTGTAGAGATTGGAAACCTGAGGGAAATGACAGAGTTGGACCTTTCACAAAACCAATTCTCTGGCACAATTCCATCAACTCTTTGGAATCTGACAAACATTCAAGTCATGAATCTTTTCTTCAATGAGCTCTCTGGAACCATTCCCACGGATATTGGAAACTTGACCTCTCTGCAAATCTTTGATGTCAACACCAATAACTTGTATGGGGAGTTGCCAGAAATCATTGCTCAACTAACTGCTTTACGAAATTTTTCTGTGTTCAGTAATAACTTCACTGGCAGCATTCCTAGAGAATTTGGAAAGAGAAATCCTTTTTTGACTGGTGTCTACCTTACCAACAACAGCTTTTCCGGAGAACTGCCAGGCGACTTGTGCAGTGATGGCCAGCTAACTATTTTGGCAGTCAATCAGAACAGTTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCATCACTTATTAGAGTTCGGCTTGATGATAACCAGCTCACTGGAAATATCACAGACGCATTTGGGGTTCTACCAAATCTTGTTTTTATCTCACTTACTAGAAATCAACTTGTTGGTGAGCTCTCTCCGGATTGGGGTGAGTGTGCCAACTTAACCAGTATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGTTGAGTCAATTAAGGTATCTAAGCCTTCATTCCAATTATTTCACTGGTAGTATCCCACCTGAAATGGGAAATCTAAGCCTGCTTTTCACGTTCAATCTGAGCAGTAACCAATTATCGGGAGAAATCCCAAAGAGTTACGGAAGATTGGCTCAGCTAAATTTTCTTGATTTATCAAATAACAGCTTCAGTGGAAGCATTCCTAAAGAGCTTGGTGATTGTGATCGCTTACTGAGCCTGAATTTAAGTCATAACAGTCTATCTGGGGAGATACCAAATGAACTTGGCAATCTGTTCTCACTGCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCTGGGCCTCTTCCCCAAAACCTTGGAAAGTTAACAACATTGGAGATTCTCAATGTGTCACACAACCATCTATCAGGGACAATCCCACAATCTTTTTCAACCATGGTCAGCCTTCAATCTGTTGATTTTTCTTACAACAAATTGAGTGGTTCAATCCCCAGTGGTCGTGTTTTCCAGACAGCGACTGCTGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGACATAAAAGGATTAACTTGCCCCAAATCATTTTCCCCAGACAAATCCGGAGGAGTTAACAAAAAGGTTCTTCTTGGTGTTATCATACCAGTTTGTGCCTTACTTACTGGGATAATTAGTGTTGGAGTAATACTTTGTCGGCGGCATGACAAAAAACACCTTGATGAAGAGTCCAAAAGAGTTGGAAAAAGTGATCAGCCTATTAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCGATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTTGGAAGTGTTTATAGAGCACAATTACTCACAGGTCAAGTTGTTGCTGTGAAGAGGCTCAACATATCAGACTCTGATGAGATTCCAGCAATGAAGCGCCAGAGCTTTTTGAATGAGATAGAATCACTTACAGGAGTGAGACACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAATATGTAGACAGAGGAAGTTTGGCAAAAGTGTTGTATACAGAGGAAGGAAAATCGGAGCTAAGGTGGGGCACAAGGCTAAAAATCGTGCAAGGAATAGCACATGCAATTTCATACTTGCACACTGATTGCTCCCCACCAATCGTGCACCGGGATGTAACACTGAATAACATATTACTAGACTCCGACTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGCTCCGACACTTCAACTTGGACTTCAGTAGCTGGATCCTATGGTTACATGGCTCCAGAGCTAGCACAAACTATGAGAGTGACTGAGAAGTGCGATGTGTATAGTTTTGGGGTGGTGGTGATGGAGATAATGATGGGAAAGCATCCTGGAGAACTCTTGAGTACACTGTCTTCAAAGAACTATTTGTCATCAACGGAGGAAGAAGCACAGGTGGTATTGAAGGAGGTGCTTGACCAAAGGCTTCCACCTCCAACAGGCCAATTAGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCACACGTGCGGCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAACTATCGGCTACTACTCATGCTTATCTTCCCCTGCCATTTGGCATCATAACCATGAACAGGCTTTCAATGCAGGGCTCCACAAATAGTGTGTCATAA 3705 0.4216 MTNFQKVHTLLLPILFLCLLPLKIASSSRAEAEALLKWKNTLSPPLPPSLNSWSLTNLPNLCIWDAIVCDNTNTTVSEINLSGANLTGTITVLDFASLPNLTQINLDANRFGGSIPSAIGNLSKLTLLNLGNNLLENTLPDELGQLRELQYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSLYSCLPSLRRLALHLNPSLTGEFPSFILKCHNLTYLDISQNGWNGTIPESLYSNLGKLEYLNLTNCRFEGKLSPNLSMLSNLKELRIGNNMFNGPVPSEIGLISGLQILELHNISARGKIPSSIGQLRELWHLDLSVNFFNSTIPSELGLCTNLSFLSLSENDLSGPLPLSLASLSRISELGISDNSFSGELSASLISNWTQLISLQIQNNNFTGKLPTHIGLLKKINFLYLYNNHFSGPIPVEIGNLREMTELDLSQNQFSGTIPSTLWNLTNIQVMNLFFNELSGTIPTDIGNLTSLQIFDVNTNNLYGELPEIIAQLTALRNFSVFSNNFTGSIPREFGKRNPFLTGVYLTNNSFSGELPGDLCSDGQLTILAVNQNSFSGPLPKSLRNCSSLIRVRLDDNQLTGNITDAFGVLPNLVFISLTRNQLVGELSPDWGECANLTSMDMGSNKLSGKIPSALSKLSQLRYLSLHSNYFTGSIPPEMGNLSLLFTFNLSSNQLSGEIPKSYGRLAQLNFLDLSNNSFSGSIPKELGDCDRLLSLNLSHNSLSGEIPNELGNLFSLQIMLDISSNSLSGPLPQNLGKLTTLEILNVSHNHLSGTIPQSFSTMVSLQSVDFSYNKLSGSIPSGRVFQTATAEAYAGNSGLCGDIKGLTCPKSFSPDKSGGVNKKVLLGVIIPVCALLTGIISVGVILCRRHDKKHLDEESKRVGKSDQPISVVWGRDGKFTFSDLVKATDDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNISDSDEIPAMKRQSFLNEIESLTGVRHRNIIKLYGFCSCRGQMFLVYEYVDRGSLAKVLYTEEGKSELRWGTRLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEIMMGKHPGELLSTLSSKNYLSSTEEEAQVVLKEVLDQRLPPPTGQLAEAVVFTMTIALACTRAAPESRPIMRAVAQELSATTHAYLPLPFGIITMNRLSMQGSTNSVS 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01885 1234 ProSiteProfiles Protein kinase domain profile. 929 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01885 1234 SUPERFAMILY L domain-like 45 380 - -
Phco2g01885 1234 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1055 1067 IPR008266 GO:0004672|GO:0006468
Phco2g01885 1234 PANTHER LEUCINE RICH REPEAT KINASE 2 483 1208 - -
Phco2g01885 1234 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Phco2g01885 1234 Gene3D Ribonuclease Inhibitor 189 288 IPR032675 -
Phco2g01885 1234 Gene3D Ribonuclease Inhibitor 289 386 IPR032675 -
Phco2g01885 1234 SUPERFAMILY L domain-like 536 825 - -
Phco2g01885 1234 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 535 850 - -
Phco2g01885 1234 Gene3D Ribonuclease Inhibitor 387 536 IPR032675 -
Phco2g01885 1234 Gene3D Ribonuclease Inhibitor 537 848 IPR032675 -
Phco2g01885 1234 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Phco2g01885 1234 FunFam Leucine-rich repeat receptor protein kinase MSP1 891 1009 - -
Phco2g01885 1234 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 434 531 - -
Phco2g01885 1234 Gene3D Phosphorylase Kinase; domain 1 890 1009 - -
Phco2g01885 1234 ProSitePatterns Protein kinases ATP-binding region signature. 935 957 IPR017441 GO:0005524
Phco2g01885 1234 Gene3D Transferase(Phosphotransferase) domain 1 1010 1211 - -
Phco2g01885 1234 CDD STKc_IRAK 935 1204 - -
Phco2g01885 1234 Pfam Leucine Rich Repeat 779 798 IPR001611 GO:0005515
Phco2g01885 1234 Pfam Leucine Rich Repeat 247 267 IPR001611 GO:0005515
Phco2g01885 1234 FunFam MDIS1-interacting receptor like kinase 2 1010 1210 - -
Phco2g01885 1234 FunFam MDIS1-interacting receptor like kinase 2 193 387 - -
Phco2g01885 1234 SMART LRR_typ_2 800 825 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 317 341 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 122 146 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 703 727 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 486 510 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 98 121 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 607 631 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 655 679 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 776 799 IPR003591 -
Phco2g01885 1234 SMART LRR_typ_2 438 462 IPR003591 -
Phco2g01885 1234 Pfam Protein kinase domain 931 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01885 1234 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Phco2g01885 1234 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Phco2g01885 1234 SUPERFAMILY RNI-like 285 620 - -
Phco2g01885 1234 SUPERFAMILY Protein kinase-like (PK-like) 909 1204 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01885 Phco-Chr2 49479320 49483256 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco2g01885 Pkinase 8e-46 CL0016