Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01860 ATGACCAGAGTCACATTTGGAGTTCTTCTCGGTCACGTCCGGAGTTCTTCTCGGCCATGTTTGAGCCCGTCTCTGTTTAAGCCAATTCTGTTTTGTTCTTCTGCGACTCTGTTGAGTGTTTTAAAGAGCTGTTGTACTGGTTTGAAGTTCAATCTGTTGAGTGATGAAGAATTCTATCGGGTGATGATGGAAGCGGATAATGATTGCCCCAAATTTCAGGAAAACAAAAATCTTTCAATTCCCCCTGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAGGGGTGGAAATGTTAAGAAAAATGATAAATCTACGACAACCTTTCCAATTGCATCTGATCAAGAGCCAATCTGCATGAAGACTAAACTTGAGACAAATGACATTAATGCTTATAGCCAGGGTCTTATGCGTCGGCCGTGGATAAACATGGACCTGAGCAACCACCACAAGCCTGAAGAATCTCATACAAAGCATCTTCCTATGAACCTACCTTTAAATGCTGGTCGTCCAAAAGGGACCATACGTGGATGTCCTAATTGCAGTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGCGATAAGAGAACCTTTGGAAGAAGCTCCTATCTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTCCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAAAACATATGGGAAAAGTCTGAATTTGTCACTCAGATTCAGCGCATTGATGGACACCAAGTTCAGCATACTCAAGAAATTATGGCTAGTGCTTGTGAACATACAAAAACCAAGAGAAAAAGAGATGTAAAAGTAGCTTTGGGCCCTCAGCTTTGTAAAAGAAACACCAGCACTCCAAATAACCATAATGTTGAAGAATGTCATTATGAGTCTGAACCTGGTCCTAAATTCAATCTCAAAACATTTAAGGAATATGCAGATGTATTTAAGAACCAGTACTTCAATTACAAGGATAAGAAGAAATTCATATGTTCCAATATAAAGTTGGCTAGACATCAGCAGTGGGAACCATCTGTGGAGAATATTGAAGGTGAATATGGCCGAATTGTTCAAAATCCCACTGAAGAAATTGAGGTGCTTTGTTGTAACAAATTGGAGGCTGGAGTTTTTAGCAGTGGGTTTCCGACAGTTTCTGATCCTGTGGAGGCACACGCTTACCCTGAATATTTGAAAACTGGATGGAACTTGAATAACATGCTTTCAGATTCCCTTCTTTCGTTTGAAAGCCCTGATGTTTCATGTAACCTTGCCCCTAATATTAGTGTGGGAATGTGCTTCTCTGCTGACAACTGGAAAGTTGAAGAACACCACTTGTACTCATTATCTTACATAAATTTGGGTGAACCAAAAGTGTGGTATAGCGTCCCAGGAAAATTTGCTGTTAACTTTGAAACAATTTGGAAAAAGTATCTACCAGATCTGCATGCAGGAAAGCCTCATATGCAACATAATATGGAGATGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGTGTTCAGTATCCTCGTGAATTTATTCTTGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAATAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAATGTTATAGAGCTTTATCGTGAACAGAGGAAAAAGACATTACTTTCATATGACAAGCTTTTGTTAGGAGCTGCAAATGAAGCTGTCAGGGCCCAGTGGGAAACTGGTCTGTGCATGAAGAGCACATCGTCCGACAGCTTAACATATAAAGGTGCCTATCAAAAAAATGAGTTCTTAACAAAAGCTTTCAACTCTCGCATTCAGAGTGAAAGTTTGAAGAGGAAATTTCTTTCCCGTTCTTTAGTCTCACAAAGAATGGATGAAAATTTCCATGCCACTTGTAGAAGGGAATGTAGTATGTGCCTGTGTGATTTACACTTGTCTGCTGTTGGGTGTTCATGTTCAAACGACAAGTTTGCATGTCTGGATCATGCAAAACATTTCTGTTCTTGCACTTGGAGCAACAAAATTCTCTTATACCGTTATGAAATCAGTGATCTGAATGTTCTTCGTCAAGCTTTGGATGGGAAATTAAGTGCAGTCTTTAAATGGGCCAAAGAGTATCTCGGATTAACTCTGAACTCTGCTGCCTCCAAGAGATCAAACCCACGCCCAGAAAATGTTAGCGGTCCAACCTGCCCTTCGCAAGACTTGCATATGAAAAAATTTATATCCCAGACAGCAGCAAATGAATCAAAAGAGAAGCTACGTCAATTGCAGGAAATATTGAATTCATCAAAGAAAAAACAAAATGAAGTGATTTCAAGTTCTTCCCGAAAGAAACAAAATGAAGTGGTTCCAAACCCATCCAAGAAGAAACAAAAGGAAGTGGCTTCCCATGTCCCGCAGACTTCTGGTGGCACTCACAGTTCTTACGACACTCATTCAGAAATGAAGGCAGATTTGGTTCAGTCAAGCTTTGCAGAGGGAACGAAAGGAATCAATTCTGTTGGCACCGAAGTTGATAGGAAGATGGTTGGGAGCAAGTTAACAATTTCAAAGAAAGGAGATCCAAAAGCATCTAATGTTCCCTCAGTTACAAACGTACGTTACTTGTCTTTTCTACAAGAACATGAGTTACTTGATGTTTCATCTGATAGTATGAGCGCCTCTTCATCATCAGATTCTGAAGTTGCATAA 2802 0.4022 MTRVTFGVLLGHVRSSSRPCLSPSLFKPILFCSSATLLSVLKSCCTGLKFNLLSDEEFYRVMMEADNDCPKFQENKNLSIPPGFVSLTSFILRRGGNVKKNDKSTTTFPIASDQEPICMKTKLETNDINAYSQGLMRRPWINMDLSNHHKPEESHTKHLPMNLPLNAGRPKGTIRGCPNCSNCVKVTARWHPEDAIREPLEEAPIFHPTEEEFKDTLKYIASIRSKAETYGICRIVPPTCWKPPCFLQRENIWEKSEFVTQIQRIDGHQVQHTQEIMASACEHTKTKRKRDVKVALGPQLCKRNTSTPNNHNVEECHYESEPGPKFNLKTFKEYADVFKNQYFNYKDKKKFICSNIKLARHQQWEPSVENIEGEYGRIVQNPTEEIEVLCCNKLEAGVFSSGFPTVSDPVEAHAYPEYLKTGWNLNNMLSDSLLSFESPDVSCNLAPNISVGMCFSADNWKVEEHHLYSLSYINLGEPKVWYSVPGKFAVNFETIWKKYLPDLHAGKPHMQHNMEMQLSCSILKAEGIPVYRCVQYPREFILVFPGAYHSGFDCGFNCSEAISFAPLEWLLHGQNVIELYREQRKKTLLSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKGAYQKNEFLTKAFNSRIQSESLKRKFLSRSLVSQRMDENFHATCRRECSMCLCDLHLSAVGCSCSNDKFACLDHAKHFCSCTWSNKILLYRYEISDLNVLRQALDGKLSAVFKWAKEYLGLTLNSAASKRSNPRPENVSGPTCPSQDLHMKKFISQTAANESKEKLRQLQEILNSSKKKQNEVISSSSRKKQNEVVPNPSKKKQKEVASHVPQTSGGTHSSYDTHSEMKADLVQSSFAEGTKGINSVGTEVDRKMVGSKLTISKKGDPKASNVPSVTNVRYLSFLQEHELLDVSSDSMSASSSSDSEVA 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01860 933 MobiDBLite consensus disorder prediction 751 771 - -
Phco2g01860 933 Pfam C5HC2 zinc finger 672 722 IPR004198 -
Phco2g01860 933 Pfam jmjN domain 204 237 IPR003349 -
Phco2g01860 933 Pfam JmjC domain, hydroxylase 449 564 IPR003347 -
Phco2g01860 933 SUPERFAMILY Clavaminate synthase-like 330 607 - -
Phco2g01860 933 SMART cupin_9 417 581 IPR003347 -
Phco2g01860 933 ProSiteProfiles JmjN domain profile. 203 244 IPR003349 -
Phco2g01860 933 Gene3D Cupin 188 565 - -
Phco2g01860 933 ProSiteProfiles JmjC domain profile. 417 581 IPR003347 -
Phco2g01860 933 MobiDBLite consensus disorder prediction 801 848 - -
Phco2g01860 933 MobiDBLite consensus disorder prediction 833 848 - -
Phco2g01860 933 Coils Coil 783 803 - -
Phco2g01860 933 SMART JmjN_1 202 243 IPR003349 -
Phco2g01860 933 PANTHER LYSINE-SPECIFIC DEMETHYLASE 198 844 - -
Phco2g01860 933 MobiDBLite consensus disorder prediction 801 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01860 Phco-Chr2 49223622 49229294 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco2g01860 JmjC 6.7e-31 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01860 2 49223622 49229294 Phco2g01860 2 49223622 49229294 ECH