Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01854 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCATGAAGAAGATCAAATTCTCATCGGTTACATCAACACTTATGGCCATGCTAATTGGCGTTCACTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAAAGCTGTAGACTCCGATGGATAAATTATCTGAGGCCAGACATCAAACGAGGCAACTTCACCAGAGAAGAAGAGGATGCTATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATAGCAGCGAGATTACCTGGTAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACCGACAAAGCCACGACCAAAAACGAAGCAAAAAACAAGCAAAGTTGGATGGGGACGCTTCCAGAACCAATTACCAAGACGCCAAACTAGAACAACAAGATGAGCCCGTGAACAACATGCACAGTCATGCATCAACCAAAGAAGATAATAGCACAGAGGATATGCCACTTTCTCCTCCCCAATGTTCTAGCGACATGTCTTCCCTCACCACTAGTGACAACAATAGCAGCATTAATAATAATAGTAATAATTGTGACATGTCCTTGCATGTTAATGATATTGACACACCGGAGAACAATCTTGCATTGGACGACGATTTCTGGTCTGAAGTTTTGTCATCTGATGATAATTCCGGTGAGACAAGTGGATTTCCGAGCATTGATTATGGTCGGTTTGAACCGATGTCTAGCGAAGAAGGAGTGCTTATAGATGGTAGTTCGTCAAGTATGTGCGATGGCATGGACTTTTGGTGCAACGTTTACGCTAGAGCTGAGGAATTCAACCAGTTATTGGAATTATGA 879 0.438 MGRAPCCEKMGLKRGPWTHEEDQILIGYINTYGHANWRSLPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYRQSHDQKRSKKQAKLDGDASRTNYQDAKLEQQDEPVNNMHSHASTKEDNSTEDMPLSPPQCSSDMSSLTTSDNNSSINNNSNNCDMSLHVNDIDTPENNLALDDDFWSEVLSSDDNSGETSGFPSIDYGRFEPMSSEEGVLIDGSSSSMCDGMDFWCNVYARAEEFNQLLEL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01854 292 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco2g01854 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco2g01854 292 CDD SANT 69 112 IPR001005 -
Phco2g01854 292 MobiDBLite consensus disorder prediction 113 200 - -
Phco2g01854 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco2g01854 292 CDD SANT 16 61 IPR001005 -
Phco2g01854 292 Gene3D - 68 141 - -
Phco2g01854 292 SMART sant 13 63 IPR001005 -
Phco2g01854 292 SMART sant 66 114 IPR001005 -
Phco2g01854 292 FunFam MYB-related transcription factor 13 66 - -
Phco2g01854 292 FunFam Transcription factor MYB15 68 140 - -
Phco2g01854 292 Gene3D - 11 67 - -
Phco2g01854 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco2g01854 292 MobiDBLite consensus disorder prediction 118 143 - -
Phco2g01854 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco2g01854 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
Phco2g01854 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco2g01854 292 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Phco2g01854 292 MobiDBLite consensus disorder prediction 144 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01854 Phco-Chr2 49165730 49167401 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g01854 Myb_DNA-binding 1e-12 CL0123