Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g01833 | ATGTCGAACCCTCAAAATCAGAAACCATGGAAGGCGGAATATGCGAAGTCGGGGCGATCGTCATGCAGGACGTGCAAGAGCCCCATTGCCACCGAAGCGCTGCGTCTCGGCAAGATGGTCCAATCCACCAAGTTCGATGGTCTCATGCCCATGTGGAATCATGCTGCTTGCATCTTGAAGAAAGCTAATCAGATAAAATTAGTTGACGATGTTGAAAACTTAGAGTCGCTTCGTTGGGAAGATCAGCAGAACATCAGAAAATACATAGAGAGTGGCGGCAGCAGCAGCACTGCCACAAAATCAGGCTCAAAAGCTGTCAAGGATACTGAATGCGGTATTGAAGTTTCGCAGACTTCTCGTGCTACTTGTAGGGATTGCAGTCAAAAAATTATCAAAGGAGAGGTTCGTATTTCTACTAAGCCTGATGGTCCAGGTGCAAAAGGTTTGGCTTGGCACCATGCCAAGTGTCTCATGGAATTATCGCCATCAATTCAAGTGGATAAGTTATCTGGGTGGAATAGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTCGCTAAGAAGTGTCATCCGATGAACAAGGGGGGTGTTAGTGGTACAAACATTGAGACTGAAAAGGGTAAAGAATCCACACAACTACACACTTCCAAAGGTGGTATAAAACGAGGGAAAGATGCCGATAGTGAGCGAAAATCAAAAGTTGCTAAGGCCAAGGGAGATGTGTCCGCAAGCAGTGCAGTGTCAGTGAAAAATTATAATGAAACAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAAATCCAGAGCAAAGAAATCTGGGCTCTGAAGGATGATTTAAAAAAGAATGTGACAACAACAGAGTTGCGTGAAATGCTGGAAGCCAATGGTCAAGATTCAACAGGATCAGAACTTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCTTTGCCCAATATGTTCTGGATTTCTGCGTCACTCTGGAGGACTGTACCGTTGCAATGGATACATTTCCGAGTGGAGTAAATGTTCTTACTCTACCTGCGAACCAAAACGTGTTGAAGGGAAGTGGAAAATCCCAAAAGAAACAAATAATCAATACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGAAAATCTGCTGAAAGTCAAATTACTGCTAGTCATCATCAATCATCACACTCTGAAAATTTCCGAGATATCAAAGTTGCTATCTGTGGATTAGCTAACGACACTATTGAGGAATGGAAATGCAAAATTAATGCCATGGGTGGAATGTTTCATTCAAAAGTAAAGAAAGATACTAACTGCTTGGTGGTTGGTGGAGTGCTCAATGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTACTTGATTGACTGCATACAAAGAAAGAAGAGACTTCCATTTGATATGTACAATGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACAAAGTGCTGTTCATGAGGCTTCTGGCCTACAAGAGTCTGGCCACATACTTGTGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGTTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGATTGCTCTGTGTTTCGTAAATGGGGTCGAGTAGGAAATGACAAGATTGGAGGAAGTAAACTGGTGGATGGAATATCAAAATCTGATGCAATCTGTGAATTCAAACGATTATTCTTTGAGAAGACTGGAAACCCTTGGGAGGCATGGGAACAAAAGACCATTCAGAAGCAACCTGGAAGATTTTTCCCACTGGATATTGATTATGGTGTTAACAAACAGGTGTCAAAAAAGAAAAGAAATGACAATGACAGCAAACTACCCATGCCATTAATAGAATTGATTAAGATGCTCTTCAATGTGGAAACTTACAGATCTGCCATGATGGAGTTTGAGATTAATATGTCTGAAATGCCTCTTGGGAAACTAAGCAAAAGCAATATCCAAAAGGGGTTTGAAGCATTGACGGAGATACAGAATCTGTTAAAAATTACTAATCCTGATCCATCAGTCAAGGAAAGCTTACTTATTAATGCCAGCAACCGATTCTTCACCATGATCCCTTCTATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGATATTGAAATAGCCTCTAGATTAGTTGGATTTGATGCCAACAACGAGGACTCAATTGATGATAGTTATAAGAAGCTCCACTGTGATATATCTCCACTTCCTCATGATAGTGAAGATTTTTGTTTAATTGAAAAGTTCCTCCATAATACTCATGCCCCTACTCATACGGACTGGAGTCTTGAGCTGGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGTTGTCAAACTTTGTCGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGTTTGGCAAAGGGGTGTACTTTGCTGACCTGGTCAGCAAAAGTGCCCAGTATTGCTTCACTGATAAGAAAAATCCTATTGGTCTAATGCTTTTGAGTGAAGTTGCACTTGGAAACATCTATGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCCGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAAGAATCGGAATATGCAAAGTGGAGAGGCAATGTGACTGTTCCTTGTGGCAAACCAGTGCCATCAAATGTCAAGGCTTCTGAGCTCATGTACAATGAGTACATTGTTTATAATACTGCCCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA | 3009 | 0.4134 | MSNPQNQKPWKAEYAKSGRSSCRTCKSPIATEALRLGKMVQSTKFDGLMPMWNHAACILKKANQIKLVDDVENLESLRWEDQQNIRKYIESGGSSSTATKSGSKAVKDTECGIEVSQTSRATCRDCSQKIIKGEVRISTKPDGPGAKGLAWHHAKCLMELSPSIQVDKLSGWNSLSSSDQSAVSDFAKKCHPMNKGGVSGTNIETEKGKESTQLHTSKGGIKRGKDADSERKSKVAKAKGDVSASSAVSVKNYNETGEACDLEKKMEIQSKEIWALKDDLKKNVTTTELREMLEANGQDSTGSELDLRDRCADGMMFGALGLCPICSGFLRHSGGLYRCNGYISEWSKCSYSTCEPKRVEGKWKIPKETNNQYLKKWFKSQKGKKPVRILPLPSPRKSAESQITASHHQSSHSENFRDIKVAICGLANDTIEEWKCKINAMGGMFHSKVKKDTNCLVVGGVLNDEAEMRKARRMKIPIVREDYLIDCIQRKKRLPFDMYNVEMIGEASSMVTIKVKGQSAVHEASGLQESGHILVEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCSVFRKWGRVGNDKIGGSKLVDGISKSDAICEFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKKRNDNDSKLPMPLIELIKMLFNVETYRSAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLLKITNPDPSVKESLLINASNRFFTMIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNEDSIDDSYKKLHCDISPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLSNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPIGLMLLSEVALGNIYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYAKWRGNVTVPCGKPVPSNVKASELMYNEYIVYNTAQVKMQFLLKVRFHHKR | 1002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g01833 | 1002 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 7 | 104 | - | - | |
| Phco2g01833 | 1002 | SMART | WGR_cls | 541 | 625 | IPR008893 | - | |
| Phco2g01833 | 1002 | Pfam | WGR domain | 541 | 620 | IPR008893 | - | |
| Phco2g01833 | 1002 | FunFam | Poly [ADP-ribose] polymerase | 645 | 786 | - | - | |
| Phco2g01833 | 1002 | Gene3D | - | 787 | 1002 | - | - | |
| Phco2g01833 | 1002 | SUPERFAMILY | Domain of poly(ADP-ribose) polymerase | 653 | 787 | IPR036616 | GO:0003950 | |
| Phco2g01833 | 1002 | SUPERFAMILY | WGR domain-like | 509 | 635 | IPR036930 | - | |
| Phco2g01833 | 1002 | PANTHER | DNA LIGASE | 110 | 1000 | - | - | |
| Phco2g01833 | 1002 | ProSiteProfiles | Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. | 111 | 185 | IPR001510 | GO:0003677|GO:0008270 | |
| Phco2g01833 | 1002 | PIRSF | NAD_ADPRT | 3 | 1002 | IPR008288 | GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287 | |
| Phco2g01833 | 1002 | Gene3D | - | 642 | 786 | IPR036616 | GO:0003950 | |
| Phco2g01833 | 1002 | FunFam | Poly [ADP-ribose] polymerase | 246 | 318 | - | - | |
| Phco2g01833 | 1002 | SMART | BRCT_7 | 413 | 491 | IPR001357 | - | |
| Phco2g01833 | 1002 | FunFam | Poly [ADP-ribose] polymerase | 409 | 510 | - | - | |
| Phco2g01833 | 1002 | Pfam | PADR1 (NUC008) domain | 309 | 358 | IPR012982 | GO:0008270 | |
| Phco2g01833 | 1002 | FunFam | Poly [ADP-ribose] polymerase | 319 | 380 | - | - | |
| Phco2g01833 | 1002 | FunFam | Poly [ADP-ribose] polymerase | 787 | 1002 | - | - | |
| Phco2g01833 | 1002 | Pfam | Poly(ADP-ribose) polymerase, regulatory domain | 653 | 783 | IPR004102 | GO:0003950 | |
| Phco2g01833 | 1002 | CDD | WGR_PARP1_like | 531 | 637 | - | - | |
| Phco2g01833 | 1002 | ProSiteProfiles | PARP catalytic domain profile. | 777 | 1002 | IPR012317 | GO:0003950 | |
| Phco2g01833 | 1002 | Pfam | BRCA1 C Terminus (BRCT) domain | 413 | 488 | IPR001357 | - | |
| Phco2g01833 | 1002 | MobiDBLite | consensus disorder prediction | 219 | 238 | - | - | |
| Phco2g01833 | 1002 | ProSiteProfiles | WGR domain profile. | 530 | 630 | IPR008893 | - | |
| Phco2g01833 | 1002 | SMART | PADR1_2 | 307 | 360 | IPR012982 | GO:0008270 | |
| Phco2g01833 | 1002 | MobiDBLite | consensus disorder prediction | 193 | 240 | - | - | |
| Phco2g01833 | 1002 | ProSiteProfiles | PARP alpha-helical domain profile. | 652 | 770 | IPR004102 | GO:0003950 | |
| Phco2g01833 | 1002 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 111 | 196 | - | - | |
| Phco2g01833 | 1002 | Gene3D | BRCT domain | 407 | 507 | IPR036420 | - | |
| Phco2g01833 | 1002 | Gene3D | - | 107 | 208 | IPR036957 | GO:0003677|GO:0008270 | |
| Phco2g01833 | 1002 | Gene3D | - | 2 | 106 | IPR036957 | GO:0003677|GO:0008270 | |
| Phco2g01833 | 1002 | ProSiteProfiles | Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. | 10 | 93 | IPR001510 | GO:0003677|GO:0008270 | |
| Phco2g01833 | 1002 | SUPERFAMILY | ADP-ribosylation | 786 | 1001 | - | - | |
| Phco2g01833 | 1002 | ProSiteProfiles | SAP motif profile. | 281 | 315 | IPR003034 | - | |
| Phco2g01833 | 1002 | ProSiteProfiles | BRCT domain profile. | 411 | 501 | IPR001357 | - | |
| Phco2g01833 | 1002 | ProSiteProfiles | Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. | 253 | 392 | IPR047572 | GO:0008270 | |
| Phco2g01833 | 1002 | FunFam | Poly [ADP-ribose] polymerase | 105 | 218 | - | - | |
| Phco2g01833 | 1002 | Gene3D | - | 319 | 379 | IPR038650 | - | |
| Phco2g01833 | 1002 | SMART | zf_PARP_3 | 13 | 90 | IPR001510 | GO:0003677|GO:0008270 | |
| Phco2g01833 | 1002 | SMART | zf_PARP_3 | 114 | 188 | IPR001510 | GO:0003677|GO:0008270 | |
| Phco2g01833 | 1002 | MobiDBLite | consensus disorder prediction | 389 | 412 | - | - | |
| Phco2g01833 | 1002 | CDD | parp_like | 653 | 997 | - | - | |
| Phco2g01833 | 1002 | FunFam | Poly [ADP-ribose] polymerase | 4 | 104 | - | - | |
| Phco2g01833 | 1002 | Pfam | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | 13 | 89 | IPR001510 | GO:0003677|GO:0008270 | |
| Phco2g01833 | 1002 | Pfam | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | 114 | 185 | IPR001510 | GO:0003677|GO:0008270 | |
| Phco2g01833 | 1002 | Pfam | Poly(ADP-ribose) polymerase catalytic domain | 797 | 998 | IPR012317 | GO:0003950 | |
| Phco2g01833 | 1002 | Gene3D | - | 246 | 318 | - | - | |
| Phco2g01833 | 1002 | SUPERFAMILY | BRCT domain | 413 | 500 | IPR036420 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g01833 | Phco-Chr2 | 48873854 | 48883250 | Dispersed |