Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01828 ATGGAAGGAAACTATCTGACCAGAAACACGCATAAAGGGGATAGGTTTGGCTTTGAGGAGCTTTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGTAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCTTCCTTACCCTCATCATCATGGGTTTCTGAGTGTCCAAAACCTAACCCTAGCATTGTGCCTAACCCCACTCATCTTTCACCCTCCCCTCCATCGTCGTGTCTATCTAACAATAACCTTCTGAATTGTGCTCATTGTTCTCCACTTTATAGCCCTTCTTTGACTTTGTCTTTTTCACTGACCCCGCCGGTTTCTCTCAATGGAGACAAGAAACCAAGACTCGCGTCTTCTCAGTTTCTTCCTCTTTCGGTTTCTCAGGAAAATGAGGAAATTAAGATTTGTAAGAACAAAGAGATTGGTTTGGGAGTTGAAGAAGAACAGGGTTGTGCAATAGGGGAGGAATGCAAGGTTTGCAAGAGTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTTATCAAACAACCAGAGAAGTTAGATTTGGAGCTACGACTGGGGCACTAA 633 0.4439 MEGNYLTRNTHKGDRFGFEELSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSSWVSECPKPNPSIVPNPTHLSPSPPSSCLSNNNLLNCAHCSPLYSPSLTLSFSLTPPVSLNGDKKPRLASSQFLPLSVSQENEEIKICKNKEIGLGVEEEQGCAIGEECKVCKSSEHNIKLELGIGFIKQPEKLDLELRLGH 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01828 210 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Phco2g01828 210 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Phco2g01828 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Phco2g01828 210 SMART c2h2final6 32 54 IPR013087 -
Phco2g01828 210 PANTHER OS07G0101800 PROTEIN 16 210 - -
Phco2g01828 210 Gene3D Classic Zinc Finger 21 74 - -
Phco2g01828 210 Pfam C2H2-type zinc finger 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01828 Phco-Chr2 48825057 48825689 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g01828 zf-C2H2_6 6.8e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01828 2 48825057 48825689 Phco6g01022 6 10143034 10143684 PCT