Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01813 ATGCCTGCCCACGCGCTTCCAATCCACAAACACTCTCCGCCTTCGCCCAGAGAGGCCCATTTCAGAGGCGTCCGCAAGCGTCCATGGGGCCGTTTCGCCGCCGAGATCCGCGATCCTTGGAAAAAGACCCGAAAGTGGCTCGGAACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACACCGCAGCCAGAACGCTCCGAGGGCCCAAGGCCAAAACCAACTTCACCTACGTTGTTGCTCCCCCGGTGCTCGCTGCTCCTGAGTCCCAGGCCCAAGCCCATGACCGACTGGCCAGACCGGTCGAGTTCTGGGGTCTGCCTTTGTTTTTCACCACGGAAGCAGCTTCCGGGGCGCCGGTGAGGTCGGAGTACAAGGGTTACAAGTTGGAGAACATTGCAGGTTTTGTGGTTACCAAGGAGGAGGATAAGAAGCCGTTTTTGTTCGACCTTAATCTGCCGGCGCCACTCTTCTAA 477 0.5975 MPAHALPIHKHSPPSPREAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVVAPPVLAAPESQAQAHDRLARPVEFWGLPLFFTTEAASGAPVRSEYKGYKLENIAGFVVTKEEDKKPFLFDLNLPAPLF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01813 158 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Phco2g01813 158 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Phco2g01813 158 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Phco2g01813 158 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Phco2g01813 158 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Phco2g01813 158 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Phco2g01813 158 MobiDBLite consensus disorder prediction 1 22 - -
Phco2g01813 158 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Phco2g01813 158 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 93 - -
Phco2g01813 158 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Phco2g01813 158 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01813 Phco-Chr2 48649345 48649821 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01813 AP2 1.8e-13 CL0081