Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01799 ATGGCTAATAACCCTTCCGACGCTCCCGCCGACGATTTCCTTGAACAAATTCTCGGCCTCCCGACCTTCGCTTCCGCTGACTCAGGCCTCTCTGCCGCCGATGTTGGCCTCTCCGGTACTACTTCTCCGACTTCGATGATGCTGCAGCTCAACTCTGCCGACGCCAACGCTCACCTCACCGGCGCCGCCTTCCACGCGCCGGTGTATCAGTCAGGTCTTAGCTTGGACCAAGGCAAAGGAGGGTTCATGAAGCCCGAGGAAGCCTCCGCTAGCGGAAAGCGGTATCGCGACGACGTCGTTGATGGTAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTCCTACTATGCCCGCTGCTCCACATCCTCCAGCAATACGCCCTAGGGTGCGGGCCCGGAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGTTGCAAGAACTTGTTCCTAGTGTCAACAAGACGGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCCTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCGGGTGCAGTGGCACCACTGGTAACCGACATACCATTGTCATCGGTTGAGGAAGAAGGTGGTGAAGGTGCAAGAAACCGACCAGCTTGGGACAAGTGCTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTAGCATCGGCAATTTACCAGTCACAGCCACCGGACTCTTCTAGTATAGTCAAGCCTGAAACTAATCCTCCTTCATAG 879 0.5279 MANNPSDAPADDFLEQILGLPTFASADSGLSAADVGLSGTTSPTSMMLQLNSADANAHLTGAAFHAPVYQSGLSLDQGKGGFMKPEEASASGKRYRDDVVDGRAKNVFHGQPMPPTMPAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKCSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01799 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Phco2g01799 292 SMART finulus 142 191 IPR011598 GO:0046983
Phco2g01799 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 78 271 - -
Phco2g01799 292 Gene3D - 131 193 IPR036638 GO:0046983
Phco2g01799 292 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
Phco2g01799 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Phco2g01799 292 FunFam Basic helix-loop-helix transcription factor 131 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01799 Phco-Chr2 48516654 48519812 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g01799 HLH 1.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01799 2 48516654 48519812 Phco2g01799 2 48516654 48519812 ECH