Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01780 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGAGGATGCCAGTGTTTCTTCAGGTACAAAAGTTCAGGACCTGGGAGGACTCAGTCAAGGCCTCTCTAACATTTCTCCTCAACAGCAACCCCAAAAGATCAAGAAAAAGAGAAGCCTTCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCCACTAATAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCACAGGAGGGGACATAATCTCCCCTGGAAGCTGAAGCAAAGGAACAGTAAAGAGGTAAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCATCTAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTATCAGCAAACCAATTGGCCGTTGCAGCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTTTTCCAAACCCAACAACAGAACTTCCAAAACCTCCAAAACCACCATATCACCAGTTTCAACCAATGGGATTCGTCTCAAGAAAACCCTAACCCTAGTAACATTGCCACTTCCCTCCACATCAAGCCAGAATCTCAAACTTTCCACAACCCCACCCTCTCTTCACTTCTCCAACAACAAGAGCAGCAACACCCCAACAAGGGTATGATAATCTCACCCTTCAGGAACCTCCACGTGCCCTCACAAGCCTCCACCACTGCCACGACAGCATACATGTCAGCCACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATGACGGGCCCAAGCCCTGCTGCTGCTGGGCCTCAGCGCGCAATGGGTCACGTGACTCAGCTCGGCGCGGGCGAGTTTGGCACAGGGAGCCAACTCGACCCGGTGGTGGTGCCGGAGTACGTGAGAGGGTTCCCCGGTCGGAGCCTCAAGAGTGACCGTCTAACTAGGGATTTCCTCGGACTGACGGCAGAAGCTAACGGCGGAGTTGACGGCACCGCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGTCGTTCGCAGGGGGTGTGGAGTACCTACAACCGCTCCGTCAGCATCACCACCACGCGCTTCTCAAGCCCCAACAAGGCTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1395 0.5118 MFPTAISNSTSLSEDASVSSGTKVQDLGGLSQGLSNISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAVAATTTTNPFQSLFLFQTQQQNFQNLQNHHITSFNQWDSSQENPNPSNIATSLHIKPESQTFHNPTLSSLLQQQEQQHPNKGMIISPFRNLHVPSQASTTATTAYMSATALLQKAATVGAAAMTGPSPAAAGPQRAMGHVTQLGAGEFGTGSQLDPVVVPEYVRGFPGRSLKSDRLTRDFLGLTAEANGGVDGTAVDVSTNVKDMLSFAGGVEYLQPLRQHHHHALLKPQQGFGFLETTTAPETWGNC 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01780 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 410 IPR031140 -
Phco2g01780 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Phco2g01780 464 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Phco2g01780 464 MobiDBLite consensus disorder prediction 1 59 - -
Phco2g01780 464 FunFam protein indeterminate-domain 12-like 55 123 - -
Phco2g01780 464 MobiDBLite consensus disorder prediction 1 48 - -
Phco2g01780 464 Gene3D Classic Zinc Finger 55 124 - -
Phco2g01780 464 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Phco2g01780 464 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Phco2g01780 464 Gene3D Classic Zinc Finger 145 210 - -
Phco2g01780 464 SMART c2h2final6 76 98 IPR013087 -
Phco2g01780 464 SMART c2h2final6 152 172 IPR013087 -
Phco2g01780 464 SMART c2h2final6 117 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01780 Phco-Chr2 48340210 48343615 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g01780 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01780 2 48340210 48343615 Phco6g00975 6 9542258 9545336 PCT
Phco6g01215 6 12179218 12182646 Phco2g01780 2 48340210 48343615 PCT