Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01779 ATGAACTATTTGTACCCTGTGAAAGAAGAGTACTTGGAATCGCCACCACCATCATCGCCAACGTCTCAAACAGGAGCTGATGAGTCAACAATGGTTCCTCTTCCGAGGCCAATGGAGAGGCTTCACGAAGTAGGGCCACCCCCATTTCTGAGCAAGACTTATGATGCAGTGGAGAACCCCACCACTAGCCACATAGTTTCATGGAGCAGAGGCGGTGCCAGCTTTGTGGTTTGGGATCCTCATGCTTTCTCCAGAGACCTTCTCCCTCGATACTTCAAGCACAACAATTTCTCCAGCTTTGTACGGCAACTAAACACTTACGGCTTTAGAAAAATTGATCCCGATAAGTGGGAGTTTGCAAACGAAGGATTCCTGAGAGGGCACAGGCACCTTTTGGCGAACATAAGGAGAAGAAAGCAACCTTCTCAGCCTTCTACTCAACAAGGACAAGGTCACTGTGTTGAAGTTGGCCATTTTGGACTTGATGAGGAGGTTGATCGTTTGAAGCGTGACAAGCACGTGTTAATGATGGAGCTTGTGAAGCTGAGACAGCAGCAGCTGAATACCAGGTCGCACCTTGAGGAAATGGAGGAGAGGCTACGAGGGACAGAAATTAAGCAGCAACAGATGATGGCCTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCCATCTCCAAGAAGAGGAGAAGACCAATTGAGCAAGGACCAGGAGGGGTTGGAGAATCAAGCATTGGAAGGGAAGGAAGAAGCAGCGTTAAAGTGGAGTCCCAAGTGTTTGGGGAATATGGATTTGGAGTCTCAGAGTTGGAAGTGCTGGCTTTGGAGATGCAAGGTTATGGTAGGGGAAAAAGGGAACAAGAAGAAGAGCCTGAGGCACTAGAATCACAAGAGAGGTTGGAGAAAGAGCTCGATGAAGGTTTCTGGGAAGAACTGTTCAGTGAGGGTTTTGAGGGTGAATTACATATTCCAACTTCACAAGACCAAGATGACGAAGAAGATGTCAATGTGTTAGCCAATCGCTTTGGTTACTTAGGGTCAAGTCCTAGATGA 1101 0.4777 MNYLYPVKEEYLESPPPSSPTSQTGADESTMVPLPRPMERLHEVGPPPFLSKTYDAVENPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHRHLLANIRRRKQPSQPSTQQGQGHCVEVGHFGLDEEVDRLKRDKHVLMMELVKLRQQQLNTRSHLEEMEERLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAISKKRRRPIEQGPGGVGESSIGREGRSSVKVESQVFGEYGFGVSELEVLALEMQGYGRGKREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELHIPTSQDQDDEEDVNVLANRFGYLGSSPR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01779 366 FunFam Heat shock transcription factor 1 42 139 - -
Phco2g01779 366 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01779 366 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01779 366 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01779 366 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01779 366 Coils Coil 165 199 - -
Phco2g01779 366 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01779 366 MobiDBLite consensus disorder prediction 1 32 - -
Phco2g01779 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 256 IPR027725 -
Phco2g01779 366 MobiDBLite consensus disorder prediction 244 267 - -
Phco2g01779 366 Coils Coil 227 247 - -
Phco2g01779 366 MobiDBLite consensus disorder prediction 15 29 - -
Phco2g01779 366 Gene3D - 42 139 IPR036388 -
Phco2g01779 366 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01779 366 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01779 Phco-Chr2 48318986 48320847 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco2g01779 HSF_DNA-bind 4.8e-32 CL0123