Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01775 ATGGGGAGTCTATGTTTGGAAATGATTAGTCCCGAGAAAGGTTCATGTCTGCAGAAAGTGGTAAATACTTACATGATTTTAGCCGTGTTCTATTTTTATGTCCAGATTCCAGATCTTGTTCTGCAAGAATCTGGTAGAGTTGTCGGTTACCACCGCAGAATTATTTCTTTTGGATGTATTGTTCTCAATCTGATCATCATTTTGTTATTGGAAATAGCTCAGCATATTTGTAGCGGCAACGGATTATGTTATATTATGGGTTTGTCTGTTATTATTTATTTATTTATGATAAGATCAGTGTTGCTATTTGCGATCATTTCCAGGAATTTCACTCTATCATTGGTAGTGAGTGGTAAAGTGAGTTTAGTTCAAATGGAGCAGTATGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAAAGTATGTCCTTAAAAAGATTCGTCTTGCTCGCCAAACTGACAGAACCCGTAGATCTGCTCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTTGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCCAACGGTGTTAACTTCTCTGAAGAGAAACTTTGCAAGTGGCTCGTTCAATTGCTGATGGCTCTTGATTACTTGCATGTAAATCATATCCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCGAGATATTCGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCCAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCACTTGACATACAATCATTGATTAACAAAATAAACAAGTGTATAGTAGCTCCCATGCCCGCTATGTATACTGCTGCTTTTCGGGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCAAAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCAATGGCCAGAGCCAAGTTACGTAAGGAGAACTCGCTACGTAGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATTCTTGTCATTTAGCAAGGACAGGGCACTGAATCCTAGTATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCTCTTGTTCAGAAGAGAAAATCTATGAACTATCTGTAGGTTGTGTACGTAACAAATACAATGCTGACACATCAAAAGCCACAAAGTTCTCAACAGTTGAAAGAACACCAAGATTGAGGGCAGTTACAGCTTCTGCCACTGCCAAAAGGCAAACAATGGCACCATCAAAGACAACCTCTACAGTTCCAAACCGAGATTCACTTCCAGTATCTAATGCACCATCTGGAAGGTTTTCCTCACCACCAAGAGCCAGGGCGACAGCAAACTTGTACACCAATTTTTGTGTCCTTGGAAATTTGAACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATTCCCAATGGCTTTATGTGAGGATCCTTTTTTCCCTATCCGTGGACCATCATTAACTTCAGCTCGCTGCTCTTCAAGCTCAACACGGAGTACTGCGGATATCTCCATCACAATGGACAAGTGTTTAATCCTGGAGGACAAAGTTACTGTCCCCAACAGAATCAGTTATGCTAGCCCTGGTCCAAAGGGAACTGAATGCCGTTCTGAGCATGTAAAAGCCTGTGTTTCAAGTCGCTCCTCTGCTGCGGTGGATCAGCGCCGGTTTGACACGTCCTCATACCAGCAGCGCGCAGAGGCATTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTACAACAACAAAGGTTTGAAGAGCTTGGGGTTTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCTCCCAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 2184 0.4208 MGSLCLEMISPEKGSCLQKVVNTYMILAVFYFYVQIPDLVLQESGRVVGYHRRIISFGCIVLNLIIILLLEIAQHICSGNGLCYIMGLSVIIYLFMIRSVLLFAIISRNFTLSLVVSGKVSLVQMEQYEILEQIGKGAFGSALLVRHRHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALDIQSLINKINKCIVAPMPAMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIQKIHLKLNSPRRSTFPFQWPEPSYVRRTRYVEPESVSTLSDQDKFLSFSKDRALNPSISGTEQVSQCSTQRAHGLSSCSEEKIYELSVGCVRNKYNADTSKATKFSTVERTPRLRAVTASATAKRQTMAPSKTTSTVPNRDSLPVSNAPSGRFSSPPRARATANLYTNFCVLGNLNSPNVSVNAPRIDKMAEFPMALCEDPFFPIRGPSLTSARCSSSSTRSTADISITMDKCLILEDKVTVPNRISYASPGPKGTECRSEHVKACVSSRSSAAVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01775 727 CDD STKc_Nek 127 382 - -
Phco2g01775 727 Gene3D Phosphorylase Kinase; domain 1 112 207 - -
Phco2g01775 727 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Phco2g01775 727 FunFam Serine/threonine-protein kinase Nek2 125 207 - -
Phco2g01775 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Phco2g01775 727 MobiDBLite consensus disorder prediction 506 539 - -
Phco2g01775 727 Pfam Protein kinase domain 128 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01775 727 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 125 683 - -
Phco2g01775 727 ProSiteProfiles Protein kinase domain profile. 128 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01775 727 Gene3D Transferase(Phosphotransferase) domain 1 210 431 - -
Phco2g01775 727 SUPERFAMILY Protein kinase-like (PK-like) 124 451 IPR011009 -
Phco2g01775 727 FunFam Serine/threonine-protein kinase Nek3 210 456 - -
Phco2g01775 727 SMART serkin_6 128 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01775 727 MobiDBLite consensus disorder prediction 504 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01775 Phco-Chr2 48265133 48271994 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phco2g01775 Pkinase 1.7e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01775 2 48265133 48271994 Phco2g01775 2 48265133 48271994 ECH
Phco2g01775 2 48265133 48271994 Phco6g00966 6 9446413 9452095 PCT