Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01741 ATGATCGATAAAACAAAAAACAAGAAATTCAGTAAACTGGCACAAATCAAAACAGTTGGCAAAGAAAGACAGGAACCATTTTCTGCTAGTACAGAGAGGAGTCCAGATTTCCCTCCAATTTTGTTCCCATCTTCCATCTTCTGTTTTCCTTTTACCCTTTTTCTCTCTTTTCAAGATTCCATGGAAAACCCTAACACTGTGTCAAGAGGTTTGAAGCGTAAACCTGAAGGAGATCTAAGCCAGGACCAATCAGATTTCAAGGCCCAATGTCGCTTGTCAAATTTTCGTAAGAGGATTTTACGTCAGGTTTCTTTTCTTAATTCCGCTGCCTCGGATCCTGTTACCCTTAGGAAAGCCATTCACAACCTCTCTGTACTAGCAGAAAATGAGGATCTTGTGGATACTGTACTTGATTGTGGTGTTGCTCCTGCTCTGGTGAGGCATTTTCAACTGCCAGATGTACGGAATGATGATAATGGTAGAATGGGTAAAGATTCTGTTGACGGAGTTATCGATCATGAACAGTTTGAGATAGCCAAAGGATGTGCGCTCCTTATCGAGCTTCTCGCAGTCAAACAAGAGTATCAGGACCTCATAGTAGGTGCTGGAGCCTTGCCTTGTCTAGTAGAATCTTTAAAGAGGCACAAGATCTGTACTATTTCTCAGCCACTCATTAATCTTCTAAGGAGAGCAGCTGATGCAATAACGAGCTTAGCTCATGAAAATAGTGACATCAAGACCTGTGTTAGGAGAGAAGGTGGTATACCTCCTCTGGTTGAATTGCTTGAATTCGATGATATTAAAGTACAGAGAGCAGCTGCACGGACCTTAAGAACTCTTGCATTTAAAAATGATGACAATAAAAATCAGATAGTTGAATGCAATGCATTACCTACTCTTGTTCTAATGCTTGGATCAGAGGATTCTAAATTACATTCTGAGGCGATTGGTGTGATTGGAAATCTGGTCCACTCTTCGCCAAATATTAAGAAAGATGTTCTTTTAGCTGGTGCTTTACAACCTGTCATTTGTTCACTTAGTTCTAGTTCCTATTGTTCGGAGAGCAGAAGAGAAGCAGCCCTTTTACTTGGTCAGTTTGCCACAACAGATTCAGATTGCAAGGTTCATATTGCCCAGCGAGGGGCTATTCCACCATTGGTTGATATGCTGAAGTCTTCTGATGCCGAGCTTCAGGAAATGTCGTCTTTTGCACTTGGGAGGTTGGCACAGGACTCGCATAACCAAGCTGGTATTGCTCAAAGTGGAGGTATAGAGCCACTACTTAAACTTCTCGACTCAAAGAAGACGCCTGTCCAACAAAATGTTGTTTTTGCCCTCTATGGTCTTTCTGATAATGAGGACAATGTTGTTTGTATTATTAAGGCTGATGGTTTTCAAAGACTGAAGGCTGGAAATTTCAAAAATCAACAAACTGTAGAGTGTGCAGTGAAGACGTTAAAAAGATTAGAGGAAAAGATTCAAGGGCGAGTGTTGAAACACCTAATACGTCTTATGTGCTACCCTGAAGAAATGGTTCGAAGACGTGTAGCTATTGCTCTTGCATATTTATGTTCTCCTCGTGATAGAAAAACTATATTCATTGACAACAGAGGATTAAATTTGCTGCTGGACATGCTTAAATCTCCAAATGTAAGGCAGATGAGTGATGCTTCGGCTGCGCTTCACAAATTGGCTGCCAAAGCCCATTCTTCCATTGTCTCCCTTTTTGAACTTCCTCCTCCATCACCAAGTCCCCAGGTGTACTTGGGCGAGGAATATGTAAACAATCCAAAACTTTCGGACGTTACATTCCTGGTTGAAGGTAGAACCTTTTATGCTCATAGAGATTGTTTAGTTTCTTCAGACATATTTCGCGCCATGTTTGATGGCAGTTATAGGGAGAGGGAAGCAAAAAATGTAGTGATTCCAAATATAAAGTGGAATGTCTTTGAATTGATGATGAGATTTATATATACTGGAACGGTAGATGTCAGTTTGGATATGGCTCAGGATCTCCTCAGAGCGGCAGATCAGTATCTTCTGGACGGTCTCAAGCGTATTTGTGAACATGCTATTATTCAGGAAATATCAGTGGAAAATGTTGTAATACTGTACAAGGTGGCTGAAGATTTCAATGCTACTTCATTAAGACATGCATGCATACTGTTTATGTTGGAGAAATTTGATGTACTGATATCTGAACCATGGTATTGTTCCCTGGTACATCACATTCTTCCAAATATATGCATGTTCTTCTCTACTTTACTTGTTAAGTCTCATCCAGTTGACTTGTGA 2295 0.4057 MIDKTKNKKFSKLAQIKTVGKERQEPFSASTERSPDFPPILFPSSIFCFPFTLFLSFQDSMENPNTVSRGLKRKPEGDLSQDQSDFKAQCRLSNFRKRILRQVSFLNSAASDPVTLRKAIHNLSVLAENEDLVDTVLDCGVAPALVRHFQLPDVRNDDNGRMGKDSVDGVIDHEQFEIAKGCALLIELLAVKQEYQDLIVGAGALPCLVESLKRHKICTISQPLINLLRRAADAITSLAHENSDIKTCVRREGGIPPLVELLEFDDIKVQRAAARTLRTLAFKNDDNKNQIVECNALPTLVLMLGSEDSKLHSEAIGVIGNLVHSSPNIKKDVLLAGALQPVICSLSSSSYCSESRREAALLLGQFATTDSDCKVHIAQRGAIPPLVDMLKSSDAELQEMSSFALGRLAQDSHNQAGIAQSGGIEPLLKLLDSKKTPVQQNVVFALYGLSDNEDNVVCIIKADGFQRLKAGNFKNQQTVECAVKTLKRLEEKIQGRVLKHLIRLMCYPEEMVRRRVAIALAYLCSPRDRKTIFIDNRGLNLLLDMLKSPNVRQMSDASAALHKLAAKAHSSIVSLFELPPPSPSPQVYLGEEYVNNPKLSDVTFLVEGRTFYAHRDCLVSSDIFRAMFDGSYREREAKNVVIPNIKWNVFELMMRFIYTGTVDVSLDMAQDLLRAADQYLLDGLKRICEHAIIQEISVENVVILYKVAEDFNATSLRHACILFMLEKFDVLISEPWYCSLVHHILPNICMFFSTLLVKSHPVDL 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01741 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 337 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 242 282 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 192 240 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 484 525 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 326 368 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 411 451 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 526 566 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 129 191 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 284 324 IPR000225 GO:0005515
Phco2g01741 764 SMART arm_5 370 410 IPR000225 GO:0005515
Phco2g01741 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 253 288 IPR000225 GO:0005515
Phco2g01741 764 SMART BTB_4 600 696 IPR000210 GO:0005515
Phco2g01741 764 MobiDBLite consensus disorder prediction 65 84 - -
Phco2g01741 764 Pfam BTB/POZ domain 592 694 IPR000210 GO:0005515
Phco2g01741 764 Gene3D - 339 581 IPR011989 -
Phco2g01741 764 Pfam Armadillo/beta-catenin-like repeat 284 323 IPR000225 GO:0005515
Phco2g01741 764 Pfam Armadillo/beta-catenin-like repeat 242 281 IPR000225 GO:0005515
Phco2g01741 764 Pfam Armadillo/beta-catenin-like repeat 370 408 IPR000225 GO:0005515
Phco2g01741 764 SUPERFAMILY POZ domain 591 694 IPR011333 -
Phco2g01741 764 Gene3D - 79 219 IPR011989 -
Phco2g01741 764 Gene3D - 220 338 IPR011989 -
Phco2g01741 764 Gene3D Potassium Channel Kv1.1; Chain A 586 725 IPR011333 -
Phco2g01741 764 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 64 759 IPR044282 -
Phco2g01741 764 SUPERFAMILY ARM repeat 226 575 IPR016024 -
Phco2g01741 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 381 423 IPR000225 GO:0005515
Phco2g01741 764 ProSiteProfiles BTB domain profile. 600 666 IPR000210 GO:0005515
Phco2g01741 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01741 Phco-Chr2 47748821 47754483 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco2g01741 BTB 3.1e-23 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01741 2 47748821 47754483 Phco2g01741 2 47748821 47754483 ECH