Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01728 ATGGCTGCACCGCCAAATAGCAGGCTTCAAAGCATGTTAAGGGCTGCAGTGCAATCAGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCTCAACAAGGGATTTTGACGTGGGGTGATGGGTACTACAACGGAGCAATTAAGACTAGGAAGACAGTTCAAGCAATGGAAGTGAGCACTGAAGAAGCTTCTCTGCAAAGAAGCGAGCAACTTCGAGAGTTATATGAGTCGTTGTCTGCTGGAGAAGCAAACGCGCAAACTCGAAGACCATGTGCTGCTTTGTCTCCTGAGGATCTAACGGAATCAGAATGGTTCTATTTGCTGTGTGTATCTTTCTCCTTTCTTCCTGGTGAGGGGTTGCCCGGAACAGCATATGCCAGGAGGCAGCATTTATGGCTCACTGGTGCAAACGAAGTAGACAGCAGAACATTTTCCAGAGCTATTCTTGCCAAGAGTGCTCATATTCAGACAGTGATGTGCATTCCTGTGTTGGAGGGCGTGGTTGAGTTGGGCACAACTGAGAAGATGGAAGAAGACCTGAATTTCATCCAACACATAAAGAGTTTCTTCATAGATGAGCAGCCTCCAACGACAAAGCCTGCAGTGTCAGAGCATTCCACATCCAATCCCACTTCTTCTCCATACCCTGTTCTTGTCACTGCCACTACTGCCTCACCCAACAATATTCCCAACCAAAAAGACATGAACGTGGTTGATAAAGGAGAAGAAGAACCTAAGTTCAACTCTGAAGCAGCATTAGTACTTCGTAACACTTTCATACCCACCGAACTAATGGAGCTCGACACGTTGGAGGAGTTTAGGGTCGGGTCACCCGGAGATGGCTCCAACCACTTGGATTCCTTCCCCACAGAGGAATCCATGGCACTGTGTTCTGCAGGCTTGGAACTTCTTCATCTTCAACTACCACCACAACCTCCAGAACATTCTCCCTTAGAAAACATAACACAAGGCGACACAGACACTCACTACTCTCAGACAGTGTCCAACATCCTCCAAAAGAACTCCGGGTGGTGGCCGGACTCACCCTCCGTCAACCACCTCACTGATTCCTTCCAATCAGCTTTCAACAAATGGAACTCCGGCACCGACGAGTACCACGGTCACTTTCACATGACGGTGGCAGACGTCACCTCTCAGTGGCTCCTCAAGTACATCCTCTTCAGCGTTCCTTACCTACACGCCAACCGGATAAAGGGCAAGGGCACCCCGTCATACGAGACCAGCCATGTGATGGCAGAGCGCCGTCGGAGAGAGAAGCTGAATGAGAGGTTTCTGACTTTGCGTTCAATGGTACCTTTTGTAACCAGAATGGACAAGGCATCCATTCTAGGAGACACCATCGAATACATAAAACAGCTAAGGGAGAAGATTGAGAGCCTGGAGGCATGTGAGCGGCACCCGGGGAAGAGGAGGATGAGGGAGGTGGAGGTTTCGATCATAGAGAACGATGCATTGTTGGAGGTGGAGTGTGTGCATAGGGAAGGGTTGTTGCTGGATGTGATGACAATGTTGAGGGAGTTAGGGGTGGAAGTGATGATGGTGCAATCATGGGTTAGGGATGATGGAGTGTTTGTGGCAGAGATGAGGGCCAAAGTCAAGGAAAGTGGTAAAGGGAAAAAGACTATTGTGGATGTAAAGAATGCCCTAAACCAGATTATACCCCGTCATATACCCCACCATGACCCATACATACTGGCTTCCAGTGATCATTTTTAA 1740 0.4868 MAAPPNSRLQSMLRAAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAGEANAQTRRPCAALSPEDLTESEWFYLLCVSFSFLPGEGLPGTAYARRQHLWLTGANEVDSRTFSRAILAKSAHIQTVMCIPVLEGVVELGTTEKMEEDLNFIQHIKSFFIDEQPPTTKPAVSEHSTSNPTSSPYPVLVTATTASPNNIPNQKDMNVVDKGEEEPKFNSEAALVLRNTFIPTELMELDTLEEFRVGSPGDGSNHLDSFPTEESMALCSAGLELLHLQLPPQPPEHSPLENITQGDTDTHYSQTVSNILQKNSGWWPDSPSVNHLTDSFQSAFNKWNSGTDEYHGHFHMTVADVTSQWLLKYILFSVPYLHANRIKGKGTPSYETSHVMAERRRREKLNERFLTLRSMVPFVTRMDKASILGDTIEYIKQLREKIESLEACERHPGKRRMREVEVSIIENDALLEVECVHREGLLLDVMTMLRELGVEVMMVQSWVRDDGVFVAEMRAKVKESGKGKKTIVDVKNALNQIIPRHIPHHDPYILASSDHF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01728 579 PANTHER TRANSCRIPTION FACTOR TT8 3 562 - -
Phco2g01728 579 MobiDBLite consensus disorder prediction 196 216 - -
Phco2g01728 579 Pfam Helix-loop-helix DNA-binding domain 415 462 IPR011598 GO:0046983
Phco2g01728 579 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Phco2g01728 579 MobiDBLite consensus disorder prediction 200 216 - -
Phco2g01728 579 Gene3D - 410 471 IPR036638 GO:0046983
Phco2g01728 579 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 412 474 IPR036638 GO:0046983
Phco2g01728 579 SMART finulus 418 467 IPR011598 GO:0046983
Phco2g01728 579 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 412 461 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01728 Phco-Chr2 47592534 47605281 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g01728 bHLH-MYC_N 7.7e-53 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01728 2 47592534 47605281 Phco2g01728 2 47592534 47605281 ECH