Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01657 ATGTTTAAGGAGAAAGAAACAGAGCACAATACAAGGAAGTTCTGCGATTTCGAAGCAGAAGAAGGACAAGAACAAAAACTTTGGTATTCTTCGTCATCCATTTGCATACCAACAAGACACGCTTTTTTGTTCAATCTCCATAGCGGGGATGTAGCATTCCATAAAAGTAAGAGCTTTGGTTTCTCGTCATTTGGAAAGAAATACTGTAGATCTGGGTTAGCAATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCATCTGATGTCTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGAGTAATAGTACATCTACAAAATCTAGTGTTGGGTTGAATGGAAAGAACGGAGTTAGTTCAAATAATGGGGTGTACGAATTACTTGGATGCTCTGTTTGCAAGAACTTAATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTGCCATTGTAAAGTTGAAGTCCACAATATCTGCCCATCTTGCCATCACGAACTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCGTTGGAGCTTCCATGCAGATATCAGAGTCTTGGTTGTCATGATATATTCCCTTACTATACTAAGCTCAAGCACGAACAAAATTGTGGATTTCGTCCATACAATTGCCCTTATGCTGGATCTGAGTGCTCAGTGATGGGTGACATTCCGACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCACCGATATGTCAAAGCAAATCCTCATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCATTTCAGCTTGGCTCAGCTCCAGTGTATATGGCCTTTTTGCGATTCATGGGTGATGACTATGAAGCAAAGAAATTCAGCTACAGCTTAGAAGTTGGTGCAAATGGGCGCAAACTTATGTGGCAAGGGATTCCGAGGAGCATTCGGGACAGTCATAGAAAAGTTCGGGACAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTACTTTTCTGGTGGAGAAAGACAGGAGTTGAAGTTGAGAATCAGTGGTCGTATATGGAGAGAAGATTGA 1152 0.4132 MFKEKETEHNTRKFCDFEAEEGQEQKLWYSSSSICIPTRHAFLFNLHSGDVAFHKSKSFGFSSFGKKYCRSGLAMAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNSTSTKSSVGLNGKNGVSSNNGVYELLGCSVCKNLMYPPIHQCPNGHTLCCHCKVEVHNICPSCHHELGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDYEAKKFSYSLEVGANGRKLMWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRISGRIWRED 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01657 383 CDD RING-HC_SIAHs 133 171 - -
Phco2g01657 383 FunFam E3 ubiquitin-protein ligase SINAT5-like 87 186 - -
Phco2g01657 383 FunFam E3 ubiquitin-protein ligase SINAT5-like 244 376 - -
Phco2g01657 383 MobiDBLite consensus disorder prediction 97 117 - -
Phco2g01657 383 Pfam Seven in absentia protein family 177 376 IPR018121 GO:0005737|GO:0006511|GO:0007275
Phco2g01657 383 SUPERFAMILY TRAF domain-like 188 379 - -
Phco2g01657 383 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 243 377 IPR008974 GO:0005515
Phco2g01657 383 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 100 381 - -
Phco2g01657 383 MobiDBLite consensus disorder prediction 102 117 - -
Phco2g01657 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 242 IPR013083 -
Phco2g01657 383 ProSiteProfiles Zinc finger SIAH-type profile. 188 248 IPR013010 GO:0008270
Phco2g01657 383 FunFam E3 ubiquitin-protein ligase SINAT3 187 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01657 Phco-Chr2 46849336 46854315 Transposed