LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g01649	ATGGAGTTGGCTTTGAGCTTAGGCCACACAGACAATGCTTCCCTAGGTTTCTCCGTACCACCGCCTCACCCCACAACACCTTCCTCAGATCCACCCCTTCACCTCCACCACCTTCTTCCTTCAACACCAGTTCTTCCTTCTCCACGCCTTCCCATTCCATGGCTCTCCCATGCATTAGGCATGGAAGAGATACCGGTGAGGGCGCTTGATGACACGGACGACGCTGCTGCAGTTTCATCCCCCAACAGTGCAGTATCGTCATTTCAGATGGATTTTTGCAGAAACAGTAGAAAGTTTTGTGAGGGTGACAGCGAAGAAGACGAAAATGGGACAGCAAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTCCTGGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAAAAACTTGTTCTTGCAAAAGAGTTAAATCTCCGTCCCCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAGTCTGACAGACGAGAATAAGAGGTTACAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACTTGTGAACCGTTTTTCAAGCAGCTTCCGGCTACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCACCACCTCCACCTCCGCTGCCGCCACCAACAATGATGGTGTTTCTCGGGACAAGCCCAGAATATTGTCAAGCCCACCCGCAGCAGGCCCACATGGCCCATCAGATTGCTTCTTCATCTGA	804	0.5037	MELALSLGHTDNASLGFSVPPPHPTTPSSDPPLHLHHLLPSTPVLPSPRLPIPWLSHALGMEEIPVRALDDTDDAAAVSSPNSAVSSFQMDFCRNSRKFCEGDSEEDENGTARKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTDENKRLQKELQELRALKTCEPFFKQLPATTLTMCPSCERVATTTSTSAAATNNDGVSRDKPRILSSPPAAGPHGPSDCFFI	267

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g01649	267	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	41	239	-	-
	Phco2g01649	267	FunFam	Homeobox-leucine zipper protein HAT22	117	163	-	-
	Phco2g01649	267	ProSitePatterns	'Homeobox' domain signature.	144	167	IPR017970	GO:0000981\|GO:0006355
	Phco2g01649	267	ProSiteProfiles	'Homeobox' domain profile.	109	169	IPR001356	GO:0003677
	Phco2g01649	267	CDD	bZIP	162	201	-	-
	Phco2g01649	267	CDD	homeodomain	113	170	IPR001356	GO:0003677
	Phco2g01649	267	Coils	Coil	175	202	-	-
	Phco2g01649	267	SMART	halz	169	212	IPR003106	GO:0006355\|GO:0043565
	Phco2g01649	267	MobiDBLite	consensus disorder prediction	1	33	-	-
	Phco2g01649	267	Pfam	Homeodomain	113	167	IPR001356	GO:0003677
	Phco2g01649	267	SMART	HOX_1	111	173	IPR001356	GO:0003677
	Phco2g01649	267	MobiDBLite	consensus disorder prediction	231	262	-	-
	Phco2g01649	267	SUPERFAMILY	Homeodomain-like	106	170	IPR009057	-
	Phco2g01649	267	Gene3D	-	117	167	-	-
	Phco2g01649	267	Pfam	Homeobox associated leucine zipper	169	203	IPR003106	GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g01649	Phco-Chr2	46796930	46797982	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Phco2g01649		Homeodomain	1.1e-14	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g01649	2	46796930	46797982	Phco2g01649	2	46796930	46797982	ECH
	Phco2g01649	2	46796930	46797982	Phco6g00202	6	1999096	2000716	PCT