Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01625 ATGAATGAGAACAAGGTTCATTGGGGAGGATTGATTCAACAAACTCATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGCAACCATTACTGTCAATATTTTGATATCAGACAGGCCTGGAATATGGGACCACTTGCGATGGTTGGAGGAGAAGCTACAGATCAGTTGCCAAACATAGGCCATGTCAAATCATCTGGCACCATTATCAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTACAGAAAACTGCATGGGATTTGCAGAATATGATTGCCAAGTTGGTATTCAACCTCAGTTATCTAAGATTAATGACTTGGAATTCCCTTTGTATCAATCTCCCAGGGAAAACCTTTTCTTGGATTCAGCAAACCAACCTGACTCCAGCTACGACTTGTCAAACACTTTGCAGTCCATAGTGAAATCTCAATTGAATAATAATCAATGTCGTGTATCCCCTGAAAGGTCCAATAAAATTTCATGTGGGAATTTTCCCACCACCAAGTTCCTTCCAATTGAACAACAGAAGTTGTTCATTGATGGTGTTATCAGGGGCTCCTCCTTTCCTAACAAAGGAAGTCAGGACCGTATGGTTGCTCGTGGATCTTTTAATTTACCTGTTGCACATCTGAGATTTTCTTCTGAGATTGAGAAGTTGTCTCCAACACTTTCAGCAGCAAGTGTGTCTACTGTTGGAAACTCTGCTTCTAATGGGGCAGTAGTCTCAAGTAAAACACGTATAAGATGGGCTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCTCTGAGCACGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGTTTGACTATCTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCGAAATTCATTCCAGAGCCCAGTCAAGGGAAATCTGACAAAAGAACCCACATAAAGAATGTGCATCATCTTGATGTAAAAACTGGCTTACAAATTAGAGAGGCACTTAAGCTTCAATTAGATGCTCAAAGGTGTCTTCACGAACAACTAGAGGTTCAGAGAAAATTACAGTTGAGAATTGAAGAACAAGGAAGGCAACTAAAAAAAATGTTTGACCAGCAGCCAAAGACAAGTAATAACCTCTTAAATGCTCACGATTCAGCCACTGATGAGACAACAATTACTCATAAAGATGGTGAGGTTTCTGTTTCTGAAGGGGCCAACAATTCCTTCTTCACTTCCAAGGCCTCGCCAAGCCAATAA 1260 0.4071 MNENKVHWGGLIQQTHGLSGDFNSEFGNHYCQYFDIRQAWNMGPLAMVGGEATDQLPNIGHVKSSGTIISRFESPASAFYATENCMGFAEYDCQVGIQPQLSKINDLEFPLYQSPRENLFLDSANQPDSSYDLSNTLQSIVKSQLNNNQCRVSPERSNKISCGNFPTTKFLPIEQQKLFIDGVIRGSSFPNKGSQDRMVARGSFNLPVAHLRFSSEIEKLSPTLSAASVSTVGNSASNGAVVSSKTRIRWAKDLHEKFVECVNRLGGSEHATPKAILKMMDTDGLTIFHVKSHLQKYRIAKFIPEPSQGKSDKRTHIKNVHHLDVKTGLQIREALKLQLDAQRCLHEQLEVQRKLQLRIEEQGRQLKKMFDQQPKTSNNLLNAHDSATDETTITHKDGEVSVSEGANNSFFTSKASPSQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01625 419 Pfam MYB-CC type transfactor, LHEQLE motif 329 375 IPR025756 -
Phco2g01625 419 Coils Coil 332 352 - -
Phco2g01625 419 MobiDBLite consensus disorder prediction 401 419 - -
Phco2g01625 419 Pfam Myb-like DNA-binding domain 249 298 IPR001005 -
Phco2g01625 419 Gene3D - 244 303 - -
Phco2g01625 419 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 238 392 IPR044848 GO:0003700
Phco2g01625 419 FunFam Myb family transcription factor 244 302 - -
Phco2g01625 419 MobiDBLite consensus disorder prediction 372 388 - -
Phco2g01625 419 SUPERFAMILY Homeodomain-like 243 299 IPR009057 -
Phco2g01625 419 MobiDBLite consensus disorder prediction 372 419 - -
Phco2g01625 419 NCBIfam myb-like DNA-binding domain, SHAQKYF class 245 300 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01625 Phco-Chr2 46556034 46558574 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco2g01625 Myb_DNA-binding 6.9e-06 CL0123