Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01619 ATGTTACCCTTTCGAAAACTCAACACTCAATGCTTCTTCTTCTTCCTTCTTAAACCCTGGCAAAACCCTAGATTCCAGAGTACGAAACCCGCCACCAAAATCGTCGGAAAAACCACCGTAAAAGAAGCCCAGGCCGCATTGCTCGAGTACCTCCACTCCACCCGCAGCCTCAACTTTTTAGACGCTGACAACATGTGCAGAAACTCGCCCTCCTTCCTCCAGGACCTCCTCGCCAAAACCCACTCGCACACGCCGCACGTGGACACCAAGCGCTCCATCTCGCGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCCTTCTTCGAGAGCGCGGGTCTCTCCCCTTCCGAGTACACGCCCCTTCTCCCGCGTCACATGATTTACCTAAACGACGACGTTCTGCTCATGGAGAATCACCACGCGCTCTGCAACTACGGGGTTCCCCGCACCAAGATGGGGAGGGTTTTCAAACTCGCGCCTCAGGTTTTTGGGTATGAACCCGGGGTTTTGATCTCTAAGCTTCGGGAATACGAAAACCTCGGTGTTTCGCGGAAGACTTTGATCAATGTGGTTGCTTCCAGCCCCTGCGTTTTGGTTGGGGCTGTGGATTTTAATTTTGTTAAGGTTGTGGAGATGTTGAAGGGTGTTAATGGAAAGGATTGTGATTGGATTGGAGAGCATTTGTTGATTAACAAGGATTGTTGTAATTGGAAGGTGATGTTTCAGGTCTTGAGTTTGCTTTCTAGGGTTTTCAATGAGAAACAATGGGGTGATTTAATCACTCGTCACCCTGGTTTGATTTTTGAGGAGTCTGGAGGTTGTGTGTTATCCTTGATAGACTTTTTGTTGAAATTTGGATTGTCTGTAAACCGGGTTTGTGTCATGCTGCACGAGTTTCCGGATATTCGGGTAGTAAAATTTTTGTCCAATTTGAGGCTGTGTTTTCTGTTCTTGACTGAGATTGAGATGGAGGCTTCGGAGATTGGGAGGATTTTGCAGTCTCACTGCTTGGTGTTGGGTTCCTTCACCATGAAGAGAACGATTACTTTGCTTACTAACTTGAATGTTGGCAAGAAGCGACTGTGTAGAGTTGTGAGGGATGATCCTCTAGTAATGAAGAGTTGGTCATTGGGAAGGAGAATTGAGCCTCTGGTTAACTCGTATTTGGAGTTTGAATCGAAGGCTCTGAAGAAGGAGTTCATGCTAAGGTTGGGGTTTGAAGAGAACTCCAAAGCAATGGATGAGACGATTAAGTTGTTCAGGGGTAAGGGAGCTGAGCTTCAGGAGAGACTTGAATTTATTGTTAATGCTGGGTTGGATTATGAGGTTGCCTGTAAGATGATTCGAGATTCCCCGCGGATTCTTAGTCAGACCACGGATAGGATCAACATGAAAATTGAGTCTCTTGTGAATGAAGGATATTCGATATCGGATTTGGAAACTTTTCCTTCCTTCCTTTCGTATTCGGCTCAAAGGGTTAAGCTGAGGTTTTCAATGTATAATTGGCTAAAACAGCATGGAGCTGCAGAAGAAGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGAAAAAGCGTTTGAGAAGCTGTACGTGAAGCGCCATCCGTCTGGCCTTCAAGTTTGGCAGGATTTAAAGGCACAAATTTCTTCCAAGGTTTAG 1662 0.4645 MLPFRKLNTQCFFFFLLKPWQNPRFQSTKPATKIVGKTTVKEAQAALLEYLHSTRSLNFLDADNMCRNSPSFLQDLLAKTHSHTPHVDTKRSISRYLRYHPINEFEPFFESAGLSPSEYTPLLPRHMIYLNDDVLLMENHHALCNYGVPRTKMGRVFKLAPQVFGYEPGVLISKLREYENLGVSRKTLINVVASSPCVLVGAVDFNFVKVVEMLKGVNGKDCDWIGEHLLINKDCCNWKVMFQVLSLLSRVFNEKQWGDLITRHPGLIFEESGGCVLSLIDFLLKFGLSVNRVCVMLHEFPDIRVVKFLSNLRLCFLFLTEIEMEASEIGRILQSHCLVLGSFTMKRTITLLTNLNVGKKRLCRVVRDDPLVMKSWSLGRRIEPLVNSYLEFESKALKKEFMLRLGFEENSKAMDETIKLFRGKGAELQERLEFIVNAGLDYEVACKMIRDSPRILSQTTDRINMKIESLVNEGYSISDLETFPSFLSYSAQRVKLRFSMYNWLKQHGAAEEGLALSTIIACSEKAFEKLYVKRHPSGLQVWQDLKAQISSKV 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01619 553 Gene3D Transcription termination factor 3, mitochondrial 67 230 IPR038538 -
Phco2g01619 553 Gene3D Transcription termination factor 3, mitochondrial 275 545 IPR038538 -
Phco2g01619 553 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Phco2g01619 553 SMART mt_12 477 510 IPR003690 GO:0003690|GO:0006355
Phco2g01619 553 SMART mt_12 446 476 IPR003690 GO:0003690|GO:0006355
Phco2g01619 553 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Phco2g01619 553 SMART mt_12 154 184 IPR003690 GO:0003690|GO:0006355
Phco2g01619 553 SMART mt_12 189 221 IPR003690 GO:0003690|GO:0006355
Phco2g01619 553 PANTHER CGI-12 PROTEIN-RELATED 243 535 IPR003690 GO:0003690|GO:0006355
Phco2g01619 553 FunFam Transcription termination factor MTEF18, mitochondrial 279 545 - -
Phco2g01619 553 Pfam mTERF 251 391 IPR003690 GO:0003690|GO:0006355
Phco2g01619 553 Pfam mTERF 412 528 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01619 Phco-Chr2 46482935 46484596 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco2g01619 mTERF 5.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01619 2 46482935 46484596 Phco2g01619 2 46482935 46484596 ECH