Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01609 ATGGGTTCAGACGCTGCCGCCACCAAACTCTCCTCTTCCGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACGCCAGCCGCTTCTCTTACTTCTGCTGCTGCTGCTGGAGTTACTTCTTCCTCTTCCTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCAAGGTGTCAAGTTGAAGGGTGTTTGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCACCAGCTTCCTGAGTTTGATCAAGGCAAAAGAAGTTGCCGCAGGCGACTAGCGGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCCCTCTTAACCTCTCGCTATGCTAGACTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGACTTCGTATCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGCTAGCTCCTGGAAGTCAAACCTCCGCACTTAGCTGGCACGGCAATTCAGAGACACCATCTGACATTTTCTTGCACGGTTCGGTGGGTGGGACAAGCTTTGCGGGTCCCGGTCATCCTCCAGGGGAAAGTTACCCAGGCGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAGCATGGGGTTCTAGAAACACAGTACCAAGTCTTGGGTTGAATAACATGATAAATTTCAATGGGACACCCATGACACAACTTACTGCTTCCTCTCATGGTGCATCACTCCATGAACTTCCAAATACCTCGTGGTGTTTCAAGGGTATTGATTCTGGTAACTGTTCGCCTGAGGTGGTCCCTGATCTAGGTCTGGGTCATATTTCACAGCCACTGAATGGCCAGCTTCATGGTGAGCTGGATCTGTCTCAACAGGGCAGGAGGCATTACATGGATCTAGAACAGTCCAGGGCATATGAATCTGCTCATTGGTCACTTTAA 1083 0.4875 MGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPAASLTSAAAAGVTSSSSSSSRKGRGGSVQPAQPPRCQVEGCLVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGGNFLMELTSYPKLSLRNSLPTPRSSELAPGSQTSALSWHGNSETPSDIFLHGSVGGTSFAGPGHPPGESYPGVTDSSCALSLLSSQAWGSRNTVPSLGLNNMINFNGTPMTQLTASSHGASLHELPNTSWCFKGIDSGNCSPEVVPDLGLGHISQPLNGQLHGELDLSQQGRRHYMDLEQSRAYESAHWSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01609 360 Gene3D - 61 132 IPR036893 GO:0003677|GO:0005634
Phco2g01609 360 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 295 IPR044817 GO:0003677
Phco2g01609 360 MobiDBLite consensus disorder prediction 46 68 - -
Phco2g01609 360 MobiDBLite consensus disorder prediction 185 241 - -
Phco2g01609 360 MobiDBLite consensus disorder prediction 46 61 - -
Phco2g01609 360 SUPERFAMILY SBT domain 69 150 IPR036893 GO:0003677|GO:0005634
Phco2g01609 360 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Phco2g01609 360 Pfam SBP domain 71 144 IPR004333 GO:0003677
Phco2g01609 360 MobiDBLite consensus disorder prediction 185 217 - -
Phco2g01609 360 FunFam Squamosa promoter-binding-like protein 14 62 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01609 Phco-Chr2 46408764 46412346 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco2g01609 SBP 2.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01609 2 46408764 46412346 Phco2g01609 2 46408764 46412346 ECH
Phco2g01609 2 46408764 46412346 Phco6g00230 6 2283597 2288882 PCT