Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01608 ATGATTCGCCACTTTCTCCACGTGCATTTTAATCTCTTTGTATTTTCAATTTTGATTTCTCAGAGCTTGGCGTTCACGCATCCACACGAAGTGTCAGCTCTCCAGGATCTATACAGGAACTTTAACTACCCACCAATGCTCAAAGGATGGGATGGTAGCGATCCTTGTGGACAGTCTTGGACAGGAGTTGCTTGTTCTGGGCCATCAGTTATACAGCTAAAACTTCAAGGATTAAACCTCACTGGGTATATTGGAAGCCTGCCATATAATCTACCTAACTTGAAGCAACTTGATGTCAGTTCAAATAACATAAAGGGCGAGATACCATTCGGTTTACCCCCCAATGTCTCCTATATGAATTTAAGCCACAATTTACTACATGGACCAATTGGTGATGTATTTACTGGTTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCTCAGGAGACCTACCGTATTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTTCCTGCAGAATAACAGATTCACTGGATCAGTCGCCTACTTGGCTGAACTTCCACTAACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCATTCTTCCACAGCATTTTCAATCCATACCGAATTTATGGATTGGAGAGAATAAATTCCATGTGGCCGACAACTCTCCTCCCTGGACTTTTCCGCTGGATACCGTGTCAGTTGAGCAGAACACTAGTAGCCCGCCCACGACTCAGGCAAATGCCATAGAGAATTATTCCCCTCCCATAGTAAGTGAGGCTCCTCCCAGAGTAAATGAGGTTCATCCCAGGGTAAAAGAGGCTCCTCCCAGAGTAAGTGACGTTCTTCACCAAGTACACGAGGCTCCTCTCAGAGTAATTAAGCACAAGAAAAATCATGTAGGTCCAGGAGGAATAGCATTTATGATTGGTGGAGGAACACTGATGGCCACAGGAGTGGCTCTCTTTGTTGCAATCCGTTTGAATAAACTTCATCTACAGAGCCAGAACTTGAGCTCAGAAAGCAACCATGGCTCATTTCATTCTCATCCGACCAGTGCAACCATAGGGGTATCTTCTACCGCACTCCAGGAGAGCCCACGCATTCCCCCCTTCAATTCTGCATCCCTTTTGGGTCCTGTGAGATTACTTTCCATGAACCATAACAATACCGAGGAAACATTCAAAAAAAGTTTTTCTAAAAGAGGCAGATCCACTGGAATAACGAAAATTTACACGGTAGCAGAGCTCGAGTTAGCTACTAATTGCTTCAGTGAAGCCAACATTCTGGGAGAGGGATCTCTTGGTCCTGTTTATAGAGCTAAATTTCCGGATGACAAAATTTTGGCCGTGAAGAAGATAAACCTTTCTTTCAAAGAAGAGGAAAAGCTCTTGGATGTCATTTGCACGGTTTCCCAACTGAAGCACCCCAACATCGTAGCACTCAATGGTTACTGTTTGGATAACGGAAAGGGTCTATTTGTTTACGATTATGTTGGAAATGTCACTCTAAACGACGCCCTTCACAACGAGGCATGCAAACCTCTGTCATGGGTTCACCGTCTCCGGATTGCTCTAGGTGTGGCTCAGGCTCTACACTATTTGCACTCAGCGTTCTGCCCTCCCGTGGCTCACGGCAATTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTTGATGCCTCGTGTTTGTAACTGTAGCTTGGTTACTTTGAGAGCACTGAATATCAATCAAGTTGAAATTCCGGCTAATGAGATTTATATTGAAGAGATGGGCTACGTTGCGCCAGATCATGGCCAACCAGGAACCAGCAGCAGAAAGAGAGACGTTTTTGCCTTCGGTGTGTTGCTTCTGGAACTGTTAACAGGAAAGAAAGCTTTCGATAGAGCCAGGTCAGGGGAGGAGCAATATCTGGTGAAATGGGCACCGCCCATGCTTCCTCATAGAGCGAATTTGGAACAACTGGTGGATCCCCGCATGAAAAGAACATTTTCATCCAAGGCTCTTTCTCGTTATGCCGATATCATCTCCCTCTGTATACGGCCTGTAAGGCAACTCCGTCCTGCAATGACCGAAGTTATGGAGTCTCTTGAATCTTTATACCAAAAGTTCGACATTGAAAAGAGCGATGTAGCAGATGGTACTGAACTTGATCCATTTTAG 2163 0.442 MIRHFLHVHFNLFVFSILISQSLAFTHPHEVSALQDLYRNFNYPPMLKGWDGSDPCGQSWTGVACSGPSVIQLKLQGLNLTGYIGSLPYNLPNLKQLDVSSNNIKGEIPFGLPPNVSYMNLSHNLLHGPIGDVFTGLDNLKEMDLSYNNFSGDLPYSFGSLRNLARLFLQNNRFTGSVAYLAELPLTDLNIQDNLFSGILPQHFQSIPNLWIGENKFHVADNSPPWTFPLDTVSVEQNTSSPPTTQANAIENYSPPIVSEAPPRVNEVHPRVKEAPPRVSDVLHQVHEAPLRVIKHKKNHVGPGGIAFMIGGGTLMATGVALFVAIRLNKLHLQSQNLSSESNHGSFHSHPTSATIGVSSTALQESPRIPPFNSASLLGPVRLLSMNHNNTEETFKKSFSKRGRSTGITKIYTVAELELATNCFSEANILGEGSLGPVYRAKFPDDKILAVKKINLSFKEEEKLLDVICTVSQLKHPNIVALNGYCLDNGKGLFVYDYVGNVTLNDALHNEACKPLSWVHRLRIALGVAQALHYLHSAFCPPVAHGNLKAANVLLDENLMPRVCNCSLVTLRALNINQVEIPANEIYIEEMGYVAPDHGQPGTSSRKRDVFAFGVLLLELLTGKKAFDRARSGEEQYLVKWAPPMLPHRANLEQLVDPRMKRTFSSKALSRYADIISLCIRPVRQLRPAMTEVMESLESLYQKFDIEKSDVADGTELDPF 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01608 720 Gene3D Ribonuclease Inhibitor 26 249 IPR032675 -
Phco2g01608 720 SUPERFAMILY L domain-like 26 365 - -
Phco2g01608 720 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Phco2g01608 720 Pfam Protein kinase domain 425 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01608 720 Gene3D Phosphorylase Kinase; domain 1 384 498 - -
Phco2g01608 720 ProSiteProfiles Protein kinase domain profile. 424 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01608 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 119 228 - -
Phco2g01608 720 SUPERFAMILY Protein kinase-like (PK-like) 405 698 IPR011009 -
Phco2g01608 720 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 700 IPR046959 -
Phco2g01608 720 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Phco2g01608 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 27 118 - -
Phco2g01608 720 FunFam Leucine-rich repeat receptor-like protein kinase 499 708 - -
Phco2g01608 720 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 389 498 - -
Phco2g01608 720 Gene3D Transferase(Phosphotransferase) domain 1 500 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01608 Phco-Chr2 46402104 46407364 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Phco2g01608 Pkinase 9.9e-29 CL0016