Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01599 ATGGCTTCCAAGACCACCAACCCAACAACAAATAATCAATTCGAACCACTCCCACCACCTCAGCACCGTCACCCTCATCCTCATCATTATCAGTTTCAACAACACCAACATCATCAACTTCATGACCATCAAATTTCTTTTGGAATGATGCAATCCTCTTCATCATCTTCCTCTATCCCCGGAAACTACCTAGGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCCTCCACTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCATCTAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATTGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGGTGCTTCTGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACAGGAAGGACCTAAAACACCAGATCCTAAGACACTAAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGATCTACAACGTGCTAGAACTCAGGGCATGTTCTTAGGTGGAGGTGCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTCGCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAGGAGCACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTTTTTGTGGACAATTGCTTGGCGCATTATGATCAAGTAATGAACCTCAAGAGCCTAGTGGCAAAAACAGATGTGTTTCATCTGGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGTTTTATGTGGATCGGAGGATTCAGGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAGCAACAAATATTGGGTATATGTGGATTGCAACAATCGACTCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTGGAGGCTCTGAATCAATCTCTTTCGGACACAATAGCTTCAGACTCTCTAAGCTATCCTCCCAATATGGCTAACTATATGGGACAAATGGCTGTTGCCATGAACAAGCTCTCAACTCTCGAAGGCTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCAGCTCCTAACAACGCGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCACGCCCTCGCGTAGAATAG 1449 0.472 MASKTTNPTTNNQFEPLPPPQHRHPHPHHYQFQQHQHHQLHDHQISFGMMQSSSSSSSIPGNYLGKDSGAYDLGELDQAFFLYLDGQADPSTVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNEGASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQDLQRARTQGMFLGGGALLGGEQSLPVAMNTISSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTIASDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01599 482 Pfam bZIP transcription factor 191 229 IPR004827 GO:0003700|GO:0006355
Phco2g01599 482 MobiDBLite consensus disorder prediction 117 145 - -
Phco2g01599 482 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700|GO:0006355
Phco2g01599 482 Gene3D - 190 240 - -
Phco2g01599 482 Coils Coil 210 237 - -
Phco2g01599 482 MobiDBLite consensus disorder prediction 1 41 - -
Phco2g01599 482 MobiDBLite consensus disorder prediction 90 194 - -
Phco2g01599 482 ProSiteProfiles DOG1 domain profile. 264 478 IPR025422 GO:0006351|GO:0043565
Phco2g01599 482 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 233 IPR004827 GO:0003700|GO:0006355
Phco2g01599 482 MobiDBLite consensus disorder prediction 90 108 - -
Phco2g01599 482 PANTHER TRANSCRIPTION FACTOR TGA9 100 480 - -
Phco2g01599 482 SMART brlzneu 187 260 IPR004827 GO:0003700|GO:0006355
Phco2g01599 482 Pfam Seed dormancy control 282 356 IPR025422 GO:0006351|GO:0043565
Phco2g01599 482 SUPERFAMILY Leucine zipper domain 191 233 IPR046347 GO:0003700|GO:0006355
Phco2g01599 482 FunFam BZIP family transcription factor 190 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01599 Phco-Chr2 46293573 46299714 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco2g01599 DOG1 8.5e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01599 2 46293573 46299714 Phco6g00239 6 2345937 2352839 PCT