Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01595 ATGGCGAATGTGACGGGTCAAATACCGCTACCACGGTTAACTAAGGCGACCAGATATGACAACTGGAGCATTCAAATGAAAGCTCTTCTCGGCTCTCAAGATACACGGGAGGTGGTCGAAGAAGGTTTTGAAGAACCAACAAATACCACGGGTTATACGGCAGCTCAAACCAAGGCGTTGAAAGAGATGCAATCGAAAGATAAGGCAGCTTTGTACATGTTGTATAGAGCTGTTGATGAGGCAATTTTTGAGAAAATTGCTGGTGCATCCACTTCAAAGGAAGCATGGGACATGTTGGAGAAGGTGTTCAAAGGAGCTGACCGAGTTAAGCAAGTGCGTCTACAAACTCTGCGTGGCGAGTTGGAGAACATGAAGATGATGGTGTCAGAAAGTGTATCTGACTACATCACGCGTGTACAGGCTGTGGTGAATCAACTCAACCGAAATGGTGAAAAGTTGACCGATGCACGAGTTGTGGAGAAGATTTTGAGAACATTAACCGACAATTTTGAGAGTATTGTGTGTGCGATAGAAGAGTCAAAAGACTTAGCAACGCTCACAGTCGACGAGCTTGCCGGTTCTCTTGAGGCACACGAGCAACGGAAGAAAAAGAAGAAGGAGGAAACACTCGAGCAAGCACTTCAAACCAAGGCGTCAATCAAAGATGAAAAGGAGAAGGAACAGTCGAGCCAACCAAATTGGCGTGGAAGAGGACGTGGTCGAGGAAGAGGCGGCCGATCAAATTATTCCAACATCGAGTGCTACAAATGTCACAAATATGGTCACTATGCGAAGGATTGCAACTCCGACAAATGTTATAATTGTGGTAAAGTGGGGCATTTTGCGAAAGATTGTCGAGCAGATATAAAGATAGAAGAGACAACCAACCTAGCCTTAGAAGACGAAACGAATGAAGGTGTTCTCTTGATGACTCAAAATGAAGTCAACATTAACAGTGACACTCTATGGTACCTCGACTCAGGAGCAAGCAACCATATGTGTGGTCACGAGTACCTATTCAAAGATATGCAAAAGATTGAAGATGGTCATGTGTCGTTTGGAGATGCATCAAAGGTGGAGGTCAAAGGCCGAGGTACGGTTTGCTACTTACAAAAGGATAGCTTAATTGGGTCTCTCCAAGATGTTTATTATGTACCAGACCTCAAGACCAACATTTTGAGTATGGGGCAACTCACGGAGAAAGGTTATTCGATATTTCTGAAAGATCGACTACTACACTTGAAGAACAAGCAAGGGCGATTGGTTGCTCGAATCGAGATGGCAAGAAATCGGATGTACAAGCTAAATTTGAGAAGCATACGAGAAAAATGTTTGCAAGTCAACACAGAAGATAAGACATCACTGTGGCATCTCCGTTTTGGTCACCTACATCATGGTGGCCTAAAAGAGTTAGCAAAGAAGAATATGGTGCACGGGCTACCCAACATGGACTACGAGGGAAAATTTTGTGAAGAATGTGTCCTCAGCAAGCATGTGAGAACCTCGTTTCCAAAGAAGGCTGAATATTGGGCTAAGCAACCTCTCGAATTGATTCACACCGATATATGTGGACCAATTACTCCAGAGTCCTTCAGCAGTAAAAGGTATTTCATTACCTTCATTGATGATTTCTCACGGAAAACTTGGGTTTATTTCCTGAAACAAAAATCCGAGGCATTCGAGGTGTTCAAAAAGTTCAAAGTGGTGGTCGAGAAGGCAACTGATAAACAGATCAAAGCTGTACGATCTGATAGAGGTGGCGAGTATACTTCGACGACTTTCATGGAGTATTGTGAAGAGCAAGGCATAAGGCGATTTTTAACCGCACTGTACACTCCTCAACAAAATGGTGTGGCCGAGAGGAAGAACCGGACCATTCTCGACATGGTTCGATCAATGCTTAAAAGCAAAAAGATGCCAAAGGAATTTTGGGCGGAAGCTGTGCAATGCGCCATCTATGTGCAAAACCGATGTCCACATGTGAAGTTAGATGATCAAACACCACAAGAGGCGTGGAGCAGACAAAAACCAACAATCTCTCATCTCAGAGTGTTTGGTAGTGTGGCTTATGCACACGTCCCAGATCAACGAAGAACGAAGCTCGAAGACAAAAGCAAAAGGTACATTTTTATTGCGTATGATGAGAAGACAAAAGGTTACAAGCTACTTGACCCAATAAGCAAGAAGGTGATGGTGAGTCGTGATGTGCAAATAAATGAAACAAGTGAGTGGGATTGGAACATTTCTTCAGAGGTTATAATTAAAGAATCATCAGTCATTGCACTGACAAGTATAAATTCTGAAACTACCGATGATGAAGATGAACCACGACAACCTAAAATGCGAAGTCTGCAAGATTTGTATGATTCGACAAATGAGGTACACCTTGTATGTCTTTTGGCAGATGTAGAAAATATCAGCTTTGAAGAGGCGGTGCGAGACAAGAAGTGGCAAACTGCCATGGATGAGGAGATTAAAGCAATTGATCGCAACAACACATGGGAGCTAATAGAATTGCCAAAGGGAAGTAAGCCCATTGGTGTGAAGTGGGTATTCAAGAAAAAGATGAATGCTCAAGGCGAGATAGAGAGGTACAAGGCGCGACTCGTTGCAAAGGGATACAAACAAAAGGAGGGAATCGACTACGATGAAGTGTTTGCTCCAGTTGTAAGAATGGAGACAATTCGATTGTTCATTTCCCTAGCGGCTCAATTTAAATGGCCGATATTTCAAATGGATGTCAAGTCGGCATTCTTAAATGGTGTGCTTGAAGAAGAAGTCTACATCGAACAACCACCCGGATACATGAAAATGGGAGAAGAGAAGAAGGTGCTAAAATTAAAGAAGGCACTTTACGGGTTGAAGCAAGCACCGCGGGCATGGAATACTCGTATCGATACATACTTCAAGGAGAACGGGTTCAAGCAATGTCCTTACGAGCATGCTCTTTACACAAAAAACAGTGGCGGTAATATGATATTTGTAGCCTTTTATGTTGATGATCTCATTTTTATGGGTAACAATAATGAGATGATAGAAGAGTTTAAGGGCACAATGAGACGAGAATTTGAGATGACAGATTTGGGATTGATGAATTTTTTCCTTGGCTTGGAAGTTAGACAAAAAGAGACGGGTATTTTTGTATCACAGGAGACATATGCAAAAGAGATTTTGAAGAAGTACAAGATGGCAAACTGCAACCCAGTATCGATACTAATGGAACCAGGTGCAAAAATCTCAAAGTTCGATGGAGGAGAACGTGTTGATGCAAGTAGATACCGGAGTTTGGTAGGAAGCCTTCGCTATCTCACATGCACGAGGCCAGATCTTTCATTAAGTGTCGGCATCATAAGTCGATTCATGGAGGAACCGATTTACTCACATTGGAAGGCGTTGAAGCGAGTCCTACGATACATCCAAGGTACTGTATCACTTGGATTGTTCTACTCAAAAGCAGAAGATTTCAAGTTGGTGGGTTACTCTGACAGCGATTGGTGTGGAGACATAGATGATCGGAAAAGCACATCGGGATACATATTCTTTATGGGCAACACAGCATTTTCTTGGCTTTCAAAGAAGCAACCGATCGTGACACTATCGACGTGTGAAGCTGAATATGTGGCAGCATCTTGGTGTGTATGTCATGCGATATGGCTTAGAAACTTGTTGAGCAAGGTGGAGCTAAAGCAACTAGGTGCAACCGTGATTCAAGTTGACAACAAATCAGCAATTGAGTTGGCAAAAAACCCAGTGAACCATGAAAGAAGCAAACACATTGACGTTCGTTTTCACTTTATCCGCGATCATGTAAAGGAAGGAAGTGTGGAATTGGTGCATGTGGCAAGTCAAGATCAAGTTGCAGATATCTTCACAAAACCGCTACCGAAAGTACTTTTCGACAAATACAAGAAGATGATTGGCATGATGGATGAAGAAATTGAATTCGATTTCAAAGCTTACATGCTGCACAAGGTTAACACTGTGAACCGAGCCTTGGACGCAGCCATTGAGCTGAGGGAGCCGAAGAAGCTCCACGAAGCCATGCGCTACACGCTCCTCGCCGGCGGCAAGAGGATTCGCCCGGTGCTCTGCATCGCCGCGTGCGAGCTCGTCGGAGGCCTCGATTACACCGCCCTACCCGCCGCATGCGCTGTCGAGATGGTCCACGCCATGTCGCTCATCCACGACGACTTGCCCTGCATTGACAACGATGACCTCCGGCGAGGGAAGCCGGCGTGCCACAAGGTCTTCGGCGAGAACGTGGCGATCCTCGCCGGCGATGCGCTGCTTGCGCGCGCGTTCGAGCACGTGGCGGCGTCGACGAAGAGCGTGTGTCCCACCCGCGTGGTTCGCGCGATAGTGGAATTGGCGCAATCAATCGGCGCGGAAGGCGTTGCGGGGGGACAAGTGATGGATATGAGTTCGAAAGGGTTGTCGAGTGAGGTGGGTCGTGAGAGAGTGGAATTCATTCACCTTCACAAATCGGCGGCGTTGTTGGAAGGTGCGGTTGTGTTGGGGGCAATAATGGGGGGTGGGTCGGACGAGGAAGTTGAGAGATTAAGGATGTTTGGTCGTTGCGTTGGGTTGATGGGTCAGGTTGTGGATGATATTCTGGATGTTACTCAATCGACGGAGAAATTGAGGAAGACGGCGGGGAAGGACTTGGTGGCTGATAAACTGACGTATCCCAAGGTTTTCGGGGTGGATAAGTCTAAGGAGATTGCTCGGAAATTGGTGGAGGATTCCAAGGAAATCTTGGTTGGGTTTGATACCCCAAAGGTAGCTCCACTCTCTGCTGTAACTAACTACATTGCAGGCAAAATCAATTAG 4830 0.4524 MANVTGQIPLPRLTKATRYDNWSIQMKALLGSQDTREVVEEGFEEPTNTTGYTAAQTKALKEMQSKDKAALYMLYRAVDEAIFEKIAGASTSKEAWDMLEKVFKGADRVKQVRLQTLRGELENMKMMVSESVSDYITRVQAVVNQLNRNGEKLTDARVVEKILRTLTDNFESIVCAIEESKDLATLTVDELAGSLEAHEQRKKKKKEETLEQALQTKASIKDEKEKEQSSQPNWRGRGRGRGRGGRSNYSNIECYKCHKYGHYAKDCNSDKCYNCGKVGHFAKDCRADIKIEETTNLALEDETNEGVLLMTQNEVNINSDTLWYLDSGASNHMCGHEYLFKDMQKIEDGHVSFGDASKVEVKGRGTVCYLQKDSLIGSLQDVYYVPDLKTNILSMGQLTEKGYSIFLKDRLLHLKNKQGRLVARIEMARNRMYKLNLRSIREKCLQVNTEDKTSLWHLRFGHLHHGGLKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTSFPKKAEYWAKQPLELIHTDICGPITPESFSSKRYFITFIDDFSRKTWVYFLKQKSEAFEVFKKFKVVVEKATDKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTALYTPQQNGVAERKNRTILDMVRSMLKSKKMPKEFWAEAVQCAIYVQNRCPHVKLDDQTPQEAWSRQKPTISHLRVFGSVAYAHVPDQRRTKLEDKSKRYIFIAYDEKTKGYKLLDPISKKVMVSRDVQINETSEWDWNISSEVIIKESSVIALTSINSETTDDEDEPRQPKMRSLQDLYDSTNEVHLVCLLADVENISFEEAVRDKKWQTAMDEEIKAIDRNNTWELIELPKGSKPIGVKWVFKKKMNAQGEIERYKARLVAKGYKQKEGIDYDEVFAPVVRMETIRLFISLAAQFKWPIFQMDVKSAFLNGVLEEEVYIEQPPGYMKMGEEKKVLKLKKALYGLKQAPRAWNTRIDTYFKENGFKQCPYEHALYTKNSGGNMIFVAFYVDDLIFMGNNNEMIEEFKGTMRREFEMTDLGLMNFFLGLEVRQKETGIFVSQETYAKEILKKYKMANCNPVSILMEPGAKISKFDGGERVDASRYRSLVGSLRYLTCTRPDLSLSVGIISRFMEEPIYSHWKALKRVLRYIQGTVSLGLFYSKAEDFKLVGYSDSDWCGDIDDRKSTSGYIFFMGNTAFSWLSKKQPIVTLSTCEAEYVAASWCVCHAIWLRNLLSKVELKQLGATVIQVDNKSAIELAKNPVNHERSKHIDVRFHFIRDHVKEGSVELVHVASQDQVADIFTKPLPKVLFDKYKKMIGMMDEEIEFDFKAYMLHKVNTVNRALDAAIELREPKKLHEAMRYTLLAGGKRIRPVLCIAACELVGGLDYTALPAACAVEMVHAMSLIHDDLPCIDNDDLRRGKPACHKVFGENVAILAGDALLARAFEHVAASTKSVCPTRVVRAIVELAQSIGAEGVAGGQVMDMSSKGLSSEVGRERVEFIHLHKSAALLEGAVVLGAIMGGGSDEEVERLRMFGRCVGLMGQVVDDILDVTQSTEKLRKTAGKDLVADKLTYPKVFGVDKSKEIARKLVEDSKEILVGFDTPKVAPLSAVTNYIAGKIN 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01595 1609 Pfam Integrase core domain 512 613 IPR001584 GO:0015074
Phco2g01595 1609 CDD Trans_IPPS_HT 1340 1604 IPR000092 GO:0008299
Phco2g01595 1609 SUPERFAMILY Retrovirus zinc finger-like domains 245 287 IPR036875 GO:0003676|GO:0008270
Phco2g01595 1609 MobiDBLite consensus disorder prediction 215 232 - -
Phco2g01595 1609 Pfam gag-polypeptide of LTR copia-type 64 204 - -
Phco2g01595 1609 SFLD Polyprenyl Transferase Like 1320 1605 - -
Phco2g01595 1609 Gene3D - 196 292 - -
Phco2g01595 1609 PANTHER GAG-POL-RELATED RETROTRANSPOSON 431 1313 - -
Phco2g01595 1609 Coils Coil 188 230 - -
Phco2g01595 1609 SUPERFAMILY DNA/RNA polymerases 830 1264 IPR043502 -
Phco2g01595 1609 ProSitePatterns Polyprenyl synthases signature 1. 1393 1409 IPR033749 -
Phco2g01595 1609 Gene3D - 506 717 IPR036397 GO:0003676
Phco2g01595 1609 FunFam Geranylgeranyl diphosphate synthase 1314 1609 - -
Phco2g01595 1609 SUPERFAMILY Ribonuclease H-like 510 670 IPR012337 -
Phco2g01595 1609 ProSiteProfiles Zinc finger CCHC-type profile. 271 286 IPR001878 GO:0003676|GO:0008270
Phco2g01595 1609 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 831 1073 IPR013103 -
Phco2g01595 1609 ProSiteProfiles Integrase catalytic domain profile. 510 676 IPR001584 GO:0015074
Phco2g01595 1609 Pfam Polyprenyl synthetase 1342 1577 IPR000092 GO:0008299
Phco2g01595 1609 Pfam Zinc knuckle 271 286 IPR001878 GO:0003676|GO:0008270
Phco2g01595 1609 CDD RNase_HI_RT_Ty1 1158 1296 - -
Phco2g01595 1609 MobiDBLite consensus disorder prediction 215 245 - -
Phco2g01595 1609 SFLD Isoprenoid Synthase Type I 1320 1605 - -
Phco2g01595 1609 SMART c2hcfinal6 271 287 IPR001878 GO:0003676|GO:0008270
Phco2g01595 1609 SMART c2hcfinal6 253 269 IPR001878 GO:0003676|GO:0008270
Phco2g01595 1609 Gene3D Farnesyl Diphosphate Synthase 1309 1609 IPR008949 -
Phco2g01595 1609 Pfam GAG-pre-integrase domain 432 498 IPR025724 -
Phco2g01595 1609 SUPERFAMILY Terpenoid synthases 1318 1585 IPR008949 -
Phco2g01595 1609 ProSiteProfiles Zinc finger CCHC-type profile. 254 267 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01595 Phco-Chr2 46262104 46267391 Proximal