Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01587 ATGGATTCGAATTCCCGTTACCAACTTCAGCAACAACACCAACCCAATTCTGGGTTACTTCGCTTTCGCTCTGCCCCCACTCAAGTTCTGGCCAATTTCAAACAAGGCGAAGCTTCCATTAACGGCAACCCCTGGGAGGGTTCTGAACCACTTTTGAGATTCTTCAATTCCGGCGACACCCTCGATACCTCGTCCCCTACCTTACGAGAATTCGTGGATAACAAGGTTTCTAATGATAATAAACAACCGCAGGAGTCAACAATATCATCATCTTCCTCATCATTATCACCTCTGAGTCGCATGAATTCCCAGCAAGGTTATAGTACTTCTGTGTTACCCTCTGGCTACCCGAGGCATGATTCTACTGTAACTGTTACTTCATCTATGATGATGGGTTCTATGGGAATGGATCAGACCGGAAAAAGCTTTAATCCCAATCTTCTCAGGCAGAGTAGCTTCCCTTCTGGCAATTTCTCTAACAACATCTCCTTTCACAACGGGTATGATGCTATAAAAGGTGTTGAAAACTTTGGTGGTGTTAATGGCAATGATGGTGAGCTTAGAATATCTATGAACAGGATGAAGAATCACATTAGCTTCTCACCAAGAAGTCCTTCCTTGGGAATTTTATCACCAACCTCTAAAATGGGCACGGAGGGTCTTAGGGTAACTAGCCCTGAGGATGGTAGACAGGGAGGTAGCAATGGTGATGCTCAATATTACGGCCCTGGATTCCCCTGTGCTTCTTGGAATGAGACGCCAAACCCCAAAAGACAGCGAAATAGTAATGATGAGTTGCTTTCTGGAGATCAGAATGGAGAGCTGGGAAATCAAGTTCATTCTCTTTCGCATCATTTGAGTTTGCCAAGAACATCCTCGGACATGTTTGCTATGGACAACTTGCTTCAGTTTAATGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTCGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAAAAGCAAACCAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAAATCTTCAGAATCAATTCAAGACTCTGAGCGAAAGACGGGCTAAATGCAAATGTATAAAGATGCAGAAATCAGAAACAGATAAAATTGCTTGA 1191 0.4332 MDSNSRYQLQQQHQPNSGLLRFRSAPTQVLANFKQGEASINGNPWEGSEPLLRFFNSGDTLDTSSPTLREFVDNKVSNDNKQPQESTISSSSSSLSPLSRMNSQQGYSTSVLPSGYPRHDSTVTVTSSMMMGSMGMDQTGKSFNPNLLRQSSFPSGNFSNNISFHNGYDAIKGVENFGGVNGNDGELRISMNRMKNHISFSPRSPSLGILSPTSKMGTEGLRVTSPEDGRQGGSNGDAQYYGPGFPCASWNETPNPKRQRNSNDELLSGDQNGELGNQVHSLSHHLSLPRTSSDMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKTLSERRAKCKCIKMQKSETDKIA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01587 396 Gene3D - 320 392 IPR036638 GO:0046983
Phco2g01587 396 FunFam Transcription factor bHLH130 family 319 388 - -
Phco2g01587 396 MobiDBLite consensus disorder prediction 75 122 - -
Phco2g01587 396 MobiDBLite consensus disorder prediction 252 277 - -
Phco2g01587 396 CDD bHLH_AtbHLH_like 323 376 IPR045239 -
Phco2g01587 396 Coils Coil 331 351 - -
Phco2g01587 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 383 IPR036638 GO:0046983
Phco2g01587 396 MobiDBLite consensus disorder prediction 1 21 - -
Phco2g01587 396 MobiDBLite consensus disorder prediction 224 277 - -
Phco2g01587 396 Pfam Helix-loop-helix DNA-binding domain 324 369 IPR011598 GO:0046983
Phco2g01587 396 SMART finulus 324 374 IPR011598 GO:0046983
Phco2g01587 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 368 IPR011598 GO:0046983
Phco2g01587 396 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01587 Phco-Chr2 46186129 46188621 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g01587 HLH 3.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01587 2 46186129 46188621 Phco2g01587 2 46186129 46188621 ECH
Phco2g01587 2 46186129 46188621 Phco6g00247 6 2406611 2409269 PCT