Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01581 ATGGAGCAAGCTCCGGTAGGATTACGCGGATCCGTGCACGACGGCGCCACACTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCAGCACCGGCGCCGGAAAACGCCAACTCGTTCACCGCGCTGCTCGAGCTTCCGCCGACGCAGGCGGTTGAACTCCTTCACTCGCCGGACTCTGATGGAGCTCGGAAGCCGCCTAATTGCCACGTCAGCGCTAATCACAAACCCTATTTGCTCAACTCTTTCGGTGGCAATTTGACCTTTCCTTCCAACTCCGCCTTAATTGAACGCGCCGCCAAGCTCTCCGTCTTCGCCGGTGAAAACTCGTCGTCGCCGGGGGAGGCGCGTCTGCTTCCGGCTGGGTCTGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTGCTCCACGCAAGGATGCGTTTCGGATCCCGCTGTTGAGAACAAGAACGAGAGGACTGCGAAGAGAAAGGAACGAGAGAAGAAAGTAACGGTTAAAGGATCGTCGAAGAAGAGTAAGAGCGTTGCCGATGAGACCTCCGGCGATGGTGAGAAGCTTCCCTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTAGACGAAATCATCAATCATGTTCAATCTCTACAGCGTCAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCTACTGATGGAGCATCTCTAATGGATAGTAACATACCTAGCATGATGACACCTCTCATGTGGCCAGAAATCCCAGTCAATGGCAACCGGCAGCATTACCAACAACAGTGGCAATTCGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCACAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCGAACTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1104 0.5163 MEQAPVGLRGSVHDGATLESIQFNEEIQGIMAPAPAPENANSFTALLELPPTQAVELLHSPDSDGARKPPNCHVSANHKPYLLNSFGGNLTFPSNSALIERAAKLSVFAGENSSSPGEARLLPAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPAVENKNERTAKRKEREKKVTVKGSSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSNIPSMMTPLMWPEIPVNGNRQHYQQQWQFDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01581 367 MobiDBLite consensus disorder prediction 158 193 - -
Phco2g01581 367 Gene3D - 204 276 IPR036638 GO:0046983
Phco2g01581 367 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 115 351 IPR024097 GO:0006355
Phco2g01581 367 SMART finulus 213 263 IPR011598 GO:0046983
Phco2g01581 367 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Phco2g01581 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Phco2g01581 367 CDD bHLH_AtBPE_like 197 282 - -
Phco2g01581 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Phco2g01581 367 MobiDBLite consensus disorder prediction 139 154 - -
Phco2g01581 367 FunFam transcription factor bHLH48-like isoform X1 204 276 - -
Phco2g01581 367 Coils Coil 247 267 - -
Phco2g01581 367 MobiDBLite consensus disorder prediction 110 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01581 Phco-Chr2 46129186 46139102 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g01581 HLH 2.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01581 2 46129186 46139102 Phco2g01581 2 46129186 46139102 ECH
Phco2g01581 2 46129186 46139102 Phco6g00250 6 2449062 2456089 PCT