Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01580 ATGATGTTTGTGTTTGATGTTATGCATCACGAGGATGACCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGCGGTGGCGCCAAGAAGCGCAAGGAGAAGACCTACGCCAAGCCTAAGAAGATCAAGCACAAACACAAGAAGGTGAAGCTCGCCATCTTGCAGTTCTATAAGGTTGACGACTCCGATAAACTCAAATCCTGCTCCCGAAATTGTAGCATTCTCGACGCGCTGGTGTGCTTGGAAACCCTACCTGTCCAAATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGACGCAGAAGCTGAGGCGCTCAAGGAACCCATGTCAAAGATTGTATCTCAACTTAAGTCTTCTCTAGTTCAATCAGATACTTGTGGACTTCTCTCTGATAATAGTGTACAGTTAGCAGTGGGAGTAGAACAACTTGATCTGCTTGATAAAGCATGCTTTGGTCGACCTGTGAGAACAATTGAAAAGGACAAACACTGGTTTCAATTAAGCTTCGAGGAGGCATTCTACCTATGCTACTCCTTGAAATGCCTTAAGATTAATGGCAGTGATACTGGTCCCCAAAACGATGAAGAGCTATGGCATTACATGAAGTCCAAGAAAGAAACATTCCCTTGTTTCTACAAGGCTTATTCCCACCTTCGAATGAAAAACTGGGTAGTGAGGTCAGGATCTCAGTATGGTGTAGACTTTGTTATCTATCGCCATCATCCATCTCGGGTTCATTCTGAGTATGGTGTGCTTGTTTTATCAGATGGGGAAGATAAAGATCTGAATGGAAGACTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTGTTGGAAGTGTTGCAAAAATCTTACTGGTTCTACATGTCAATAAAATTGGTAACAACAACGAATCTCCATTATGTCTTGCAAACTATACCGTTGAAGAGTGCACAATCACCAGATGGAGTCCAGAGCAGAACCGTGAAAAGATAGACCACGTAGTGGGAGAGAAGAGTGAGAATCCTAAAATGAACAACCCACTCATCTTCCTCCTATTCTTCCTTCTCACCCAATCTCTTCTCGCCACCTCATCACCTCTAAATCCGATCTTAATCACGCTCTCCATCGCCGACTTCGGCGCCGTCGGTGACGCCAGCTGCTACGATACCGAACCTATCCAGTCGGCCATCAACTCCTGTCCGGAAAGCGGTCCCTGCCACGTCATCTTCCCGGCCCCGGGAAAATACCTGACGGCCACCGTGTTCCTGAAATCCGGCGTGGTGCTGGTCGTGGAGCCTGGTGCCACCATCCTGGGCGGCTCCAGGCTGGAGGACTACCCGAAGGAGTCGTGGCGGTGGTACGTGGTGGTGGCGGAGAATGCGACGGACGTGGGAATCCGCGGCGGTGGAGTGGTGGATGGTCAGGCTACGAAATTCGTAGCGAGGGAAGATCCGAGGAAGAACGTGATGGTTAGTTGGAACCAAACTGGGGCTTGCTTGGGAGACGAATGCAGACCTAGACTCATTGGATTCATTGGTTGCAACAATGTTGAAGTTTCTAACATCACTCTCAACCATCCTGCCTATTGGTGTTTACACTTGGTGCGGAGTAATAACATATCCATTAAAGATATTGCAATTCATGGGGACTTTAACATACCAAACAATGATGGGATTGACATTGAGGACTCAAACAACACAGTAATCACTCGATGCCACATCGATACCGGGGATGATGCAATCTGTCCAAAGTCATACACAGGTCCTGTTAACAACCTTACAGTCACCGACTGTTGGATTCGATCCAAATCTTCTGCAATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGATAATATTACTATTGTTGATTCTCATAGAGGGATTGGATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTATTCTCCAACATTAATATCAGCACAAGATATTATGACCCGTTATGGTGGGGGAGAGCAGAGCCTATCTATGTCACGAGTTGCCCACGAAACTCAGCCTCAAAGGAGGCTTCAATCTCTGATGTATTTTTCATTAATATCACTGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGCTTAGAAATTTGAGATTCATCAACATGGACGTTACATATAGAAGGTTCACTGATTATGCTGGTGGATTATTTGACTACAGGCCAGGATGCCAAGAGTTAGTTAAACACAGGACCGCGGGCATAATGATGGAGCACATTGAAGGGCTTGAGGTTAAAAATGTTGAAATTAGATGGTCAAACAATCAACTAGAGCAGTGGAATAATCCTTTAGAGTTCAAACCATCTACTGTGAATAACATATCTTTCCTTAATTTTAGTTCTGGTTTGTATACAGATAGCAAATCAAATTATTAA 2448 0.4506 MMFVFDVMHHEDDRTLADYNIQKESTLHLVLRLRGGAKKRKEKTYAKPKKIKHKHKKVKLAILQFYKVDDSDKLKSCSRNCSILDALVCLETLPVQMAPRWKGKDAKAKKDAEAEALKEPMSKIVSQLKSSLVQSDTCGLLSDNSVQLAVGVEQLDLLDKACFGRPVRTIEKDKHWFQLSFEEAFYLCYSLKCLKINGSDTGPQNDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGSQYGVDFVIYRHHPSRVHSEYGVLVLSDGEDKDLNGRLRVWSDVHCTTRLVGSVAKILLVLHVNKIGNNNESPLCLANYTVEECTITRWSPEQNREKIDHVVGEKSENPKMNNPLIFLLFFLLTQSLLATSSPLNPILITLSIADFGAVGDASCYDTEPIQSAINSCPESGPCHVIFPAPGKYLTATVFLKSGVVLVVEPGATILGGSRLEDYPKESWRWYVVVAENATDVGIRGGGVVDGQATKFVAREDPRKNVMVSWNQTGACLGDECRPRLIGFIGCNNVEVSNITLNHPAYWCLHLVRSNNISIKDIAIHGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSYTGPVNNLTVTDCWIRSKSSAIKLGSASWFDFKHFVFDNITIVDSHRGIGFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRNSASKEASISDVFFINITANSENGIFLSGSKRGLLRNLRFINMDVTYRRFTDYAGGLFDYRPGCQELVKHRTAGIMMEHIEGLEVKNVEIRWSNNQLEQWNNPLEFKPSTVNNISFLNFSSGLYTDSKSNY 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01580 815 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 98 169 IPR006676 GO:0000213|GO:0006388
Phco2g01580 815 CDD tRNA-intron_lyase_C 224 308 IPR006677 GO:0000213|GO:0006388
Phco2g01580 815 SUPERFAMILY Pectin lyase-like 359 742 IPR011050 -
Phco2g01580 815 Gene3D - 1 39 - -
Phco2g01580 815 Gene3D - 374 739 IPR012334 -
Phco2g01580 815 FunFam tRNA-splicing endonuclease subunit Sen2-1 219 315 - -
Phco2g01580 815 Gene3D - 219 313 IPR011856 GO:0003676
Phco2g01580 815 SUPERFAMILY Ubiquitin-like 11 53 IPR029071 -
Phco2g01580 815 Pfam Glycosyl hydrolases family 28 460 731 IPR000743 GO:0004650|GO:0005975
Phco2g01580 815 Pfam tRNA intron endonuclease, catalytic C-terminal domain 224 306 IPR006677 GO:0000213|GO:0006388
Phco2g01580 815 ProSiteProfiles Ubiquitin domain profile. 1 36 IPR000626 GO:0005515
Phco2g01580 815 Pfam tRNA intron endonuclease, N-terminal domain 140 210 IPR006678 GO:0000213|GO:0006388
Phco2g01580 815 SUPERFAMILY tRNA-intron endonuclease catalytic domain-like 219 305 IPR036167 GO:0006388
Phco2g01580 815 Gene3D - 40 88 IPR038582 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01580 Phco-Chr2 46120016 46127561 Transposed