Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01577 ATGTTTCCGACTGCTGCTACTTCTGAAGGATCCTCAGTTTCGGGTCATGAGAGGAACGAGTCTCATCCATATGAAGGAGTTCGAAAAGTCGCGGATAAATCGATCTATATAGCTGAAGTACGTGAGAATGATGAAACCAAGAGCGGGGAAATAAGTAAATTTGACAATGAGGTAAATGCAGCAAGAGCTCATGACTTGGTGGCCCTGAAACTTGGGGGATCCGGTGTAAAAACAAATTTTCCAGAAAGTCAATACAAGACAGTACTGGAGACTATGACTGATATGTCAAAAACAGAAGTTGTGGATTCTGTCAGAATGTTAAGTTTCAGTTTTATGAAGTCCATGTCCATGTACCGTGGAGTCTCCAGAGATTTCTCTACTGGGAAATGGCAAGCAGATTTGGATAAAGGCAACGACGATCGCATCTTCCTTGGATTATTCGACACAGAAGAGGAAGCAGCTAGGGCTTATGATGTTGCGAGCATAAGGTTGAAAGGGCTCAACGCCATTACTAATTTCAGTATCAGGTCTTATAATGTTGATGCCATTTTGGTTGGGCAAACTTTTCATGAAAAAATGGTATATCAGTCAAAAGTCACTGTCCCTGTGGAAGATATGCAGCATTTTGAAGTGTTTCAGAACATTACTGGCCAAGGCTCTTCAACAATGTTATATGGTAGTAGTGAAGGCAATCTGAACAGGGTGGGGGTGGAAGAACTTCAAATGCCGTTGATGTCAGGAAAAACAGAAGAACAGGCAAATTTTGTGGCATTGGCCTCATTAGAAGGAAATAGCTCCACTACAAATGTGCCCTTACAAAGAGAAAATGACACTACAAGAAATTCTGGTCAGAGAAGCACGGCCAGGGAAAGGTTCAATGCTTATAAGAAATTCATCAAGAGGCCTAGACCAAGTTGA 918 0.4183 MFPTAATSEGSSVSGHERNESHPYEGVRKVADKSIYIAEVRENDETKSGEISKFDNEVNAARAHDLVALKLGGSGVKTNFPESQYKTVLETMTDMSKTEVVDSVRMLSFSFMKSMSMYRGVSRDFSTGKWQADLDKGNDDRIFLGLFDTEEEAARAYDVASIRLKGLNAITNFSIRSYNVDAILVGQTFHEKMVYQSKVTVPVEDMQHFEVFQNITGQGSSTMLYGSSEGNLNRVGVEELQMPLMSGKTEEQANFVALASLEGNSSTTNVPLQRENDTTRNSGQRSTARERFNAYKKFIKRPRPS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01577 305 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Phco2g01577 305 Pfam AP2 domain 118 166 IPR001471 GO:0003700|GO:0006355
Phco2g01577 305 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Phco2g01577 305 SMART rav1_2 23 87 IPR001471 GO:0003700|GO:0006355
Phco2g01577 305 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Phco2g01577 305 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 41 195 - -
Phco2g01577 305 CDD AP2 116 173 IPR001471 GO:0003700|GO:0006355
Phco2g01577 305 MobiDBLite consensus disorder prediction 266 289 - -
Phco2g01577 305 MobiDBLite consensus disorder prediction 1 25 - -
Phco2g01577 305 SUPERFAMILY DNA-binding domain 116 175 IPR016177 GO:0003677
Phco2g01577 305 ProSiteProfiles AP2/ERF domain profile. 23 81 IPR001471 GO:0003700|GO:0006355
Phco2g01577 305 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Phco2g01577 305 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01577 Phco-Chr2 46083025 46084953 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01577 AP2 1.3e-08 CL0081