Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01573 ATGGCCACTACTACATTCTGTACATACCTATTCCTTCTCTCTGTGTTCATTTCAATCTTCAATCTTAGTTCATCTTCATCAGAGGGGGACATCCTTCTCTCCTTCAAGGCCTCCGTTGAGGACTCTAAGAAGGCCTTGTCCAGCTGGTCCAACACTTCATCAAACCACCACTGTAACTGGACTGGAATAACCTGTTCCACAACACCTTTACTCTCAGTAACTTCTATCAACCTTCAGAGCTTAAACCTTTCTGGGGATATCTCATCTTCCATTTGTGACCTCCCAAATCTGTCTTATCTCAACCTTGCTGATAACATCTTCAACCAGCCCATCCCTCTTCACCTCTCTGAGTGTAGTTCCTTGGAGACTTTGAATCTCAGTACCAACCTAATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGCTTCCTTGAGAGTGCTTGACTTGGGAAGAAACCACATAGAAGGAAAAATCCCTGAAAGCTTAGGCTCCTTGAAGAACCTCCAAGTCCTCAACATGGGAAGCAACTTGCTTTCAGGTAGTGTACCTGCTGTCTTTGGCAATCTAACTAAACTTGAAGTTCTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAAAGGATATCGGCGAGCTTGGAAATCTAAAGCAACTTCTGTTGCAAAGCTCTTCTTTTCAAGGGAAAATTCCAGATTCTCTGGTGGGCCTGGTTAGTTTGACTCATTTAGATCTCTCTGAGAACAACCTAACAGGTGGGGTTCCTCAGGCTCTACCATCTTCTCTCAAGAACCTTGTTTCGTTAGATGTTTCAACAAACAAGCTTTTGGGGCCATTTCCTAGTGGCATCTGCAAAGGAGAAGGCCTTATAAACCTCGGTCTCCACTCAAATGCCTTCAATGGTTCAATACCCAACTCCATTGAGGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGCCTTCTCCGGGGATTTCCCCATTGCCTTGTGGTCATTGCCCAAAATCAAGCTCATTAGAGTTGAAAACAACAGATTCTCTGGACAGATACCCGAGTCAATTTCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAACAACAGCTTCGCTGGTAAAATTCCTCAAGGTCTTGGCTTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCTCAACCTTTTGGATGGTGAACTTCCTCCAAACTTTTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTAAAATACCAGCGCTGAAAAAATGCAGGAAACTAGTTTCTTTGTCTTTGGCTGATAACAGTCTAACTGGAGAAATCCCCCCTTCTCTTGCTGAGCTACCTGTACTCACTTACCTTGATCTTTCAGACAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAGAACTTGAAGCTTGCTCTTTTCAATGTCTCCTTCAATCAGCTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCATTTTTGGACGGAAACCCTGGTCTTTGTGGCCCTGGATTACCTAACTCTTGTTCTGATGACATGCCAAGACGCCACATTGGTAGCCTCACAACCTTAGCATGTGCTCTCATCAGTTTAGCCTTTGTTGTTGGAGCTGCCATTGTTGTTGGTGGGTTTATTTTGTATCGTGGATATTGCAAGGGGAATCAAGTAGGGGTTTGGCGCTCAGTGTTCTTTTATCCTCTCAGGATTACCGAGCATGATCTACTTGTAGGGATGAATGAGAAAAACTCAATGGGTAATGGTGGGTTTTTTGGTAGAGTTTATGTTGTGAGTTTACCTAGTGGTGAACTGGTAGCTGTGAAGAAGTTAGTCAATTTTGGAAACCAGTCCTCCAAAAGTTTGAAAGCGGAGGTGAAGACTTTGGCAAAAATTAGGCACAAGAATGTGGTTAAAATTCTGGGGTTCTGCCACTCCGATGAGTCAGTGTTCCTCATTTATGAGTACTTGCATGGAGGGAGCTTAGGGGATTTGATTTCTCGTCAGAATTTTGAGCTGCAGTGGGTGGTTCGATTAAGAATTGCCATTGGAGTTGCTCAAGGGCTGGCATATCTTCACAAGGATTATCTCCCTCACTTGCTTCACAGAAATGTCAAGTCAAGTAATATTTTGTTGGATGCAAACTTCGAGCCAAAACTCACAGATTTTGCTCTTGATCGAGTGGTGGGAGAAGCGTCATTTCAATCAATTTTGAACTCTGAAGCAGCATCTTCATGTTACATCGCACCAGAAAATGGTTACAGTAAGAAAGCAACTGAACAATTGGACATCTACAGCTTTGGTGTGGTATTGCTGGAGCTGGTGAGTGGTAGGCAAGCAGAGCAAACGGAGTCAATTGACTCAGTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAACATCGCTAATGGGGTGCATCAAGTTCTTGACCCAAAAATATCAAACACTTATCACGAAGAGATGATTGGAGCTTTAGATATTGCACTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCCATGGTAGAAGTTGTTAGAAGCCTTCAATCCCTGGAGTCAAGAACTTGCAATGCAAATTTGCTTGAGCCAAATGAGGAACCCTCAGTTCCAGTCTAA 2655 0.4343 MATTTFCTYLFLLSVFISIFNLSSSSSEGDILLSFKASVEDSKKALSSWSNTSSNHHCNWTGITCSTTPLLSVTSINLQSLNLSGDISSSICDLPNLSYLNLADNIFNQPIPLHLSECSSLETLNLSTNLIWGTIPSQISQFASLRVLDLGRNHIEGKIPESLGSLKNLQVLNMGSNLLSGSVPAVFGNLTKLEVLDLSQNPYLVSEIPKDIGELGNLKQLLLQSSSFQGKIPDSLVGLVSLTHLDLSENNLTGGVPQALPSSLKNLVSLDVSTNKLLGPFPSGICKGEGLINLGLHSNAFNGSIPNSIEECKSLERFQVQNNAFSGDFPIALWSLPKIKLIRVENNRFSGQIPESISGAVQLEQVQLDNNSFAGKIPQGLGFVKSLYRFSASLNLLDGELPPNFCDSPVMSIVNLSHNSLSGKIPALKKCRKLVSLSLADNSLTGEIPPSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLDGNPGLCGPGLPNSCSDDMPRRHIGSLTTLACALISLAFVVGAAIVVGGFILYRGYCKGNQVGVWRSVFFYPLRITEHDLLVGMNEKNSMGNGGFFGRVYVVSLPSGELVAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISRQNFELQWVVRLRIAIGVAQGLAYLHKDYLPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEASFQSILNSEAASSCYIAPENGYSKKATEQLDIYSFGVVLLELVSGRQAEQTESIDSVDIVKWVRRKVNIANGVHQVLDPKISNTYHEEMIGALDIALRCTSVVPEKRPSMVEVVRSLQSLESRTCNANLLEPNEEPSVPV 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01573 884 FunFam Leucine-rich repeat family protein 27 184 - -
Phco2g01573 884 ProSiteProfiles Protein kinase domain profile. 593 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01573 884 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Phco2g01573 884 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Phco2g01573 884 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Phco2g01573 884 Gene3D Phosphorylase Kinase; domain 1 586 668 - -
Phco2g01573 884 Gene3D Ribonuclease Inhibitor 183 238 IPR032675 -
Phco2g01573 884 Gene3D Transferase(Phosphotransferase) domain 1 669 877 - -
Phco2g01573 884 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 262 526 - -
Phco2g01573 884 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 669 869 - -
Phco2g01573 884 SUPERFAMILY L domain-like 26 300 - -
Phco2g01573 884 SUPERFAMILY L domain-like 206 519 - -
Phco2g01573 884 Gene3D Ribonuclease Inhibitor 258 526 IPR032675 -
Phco2g01573 884 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Phco2g01573 884 SMART LRR_typ_2 166 189 IPR003591 -
Phco2g01573 884 SMART LRR_typ_2 190 215 IPR003591 -
Phco2g01573 884 SMART LRR_typ_2 455 478 IPR003591 -
Phco2g01573 884 SMART LRR_typ_2 264 288 IPR003591 -
Phco2g01573 884 SMART LRR_typ_2 239 262 IPR003591 -
Phco2g01573 884 SMART LRR_typ_2 142 165 IPR003591 -
Phco2g01573 884 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 863 - -
Phco2g01573 884 Pfam Protein kinase domain 594 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01573 884 PRINTS Leucine-rich repeat signature 242 255 - -
Phco2g01573 884 PRINTS Leucine-rich repeat signature 455 468 - -
Phco2g01573 884 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Phco2g01573 884 CDD STKc_IRAK 598 864 - -
Phco2g01573 884 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Phco2g01573 884 FunFam - 587 668 - -
Phco2g01573 884 SUPERFAMILY Protein kinase-like (PK-like) 601 861 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01573 Phco-Chr2 46046807 46049990 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco2g01573 Pkinase 2.8e-39 CL0016