Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01572 ATGGCGCAGAAGAAGAAAGCTAGGGTTTCTGACGACGAGGAAATGAAAGGGCAGCGTGATGAAACCAGCCTCTACCAGGTTCTTGGTGTGGAGAGAACCGCGTCTCAGCAGGAAATAAAGAAGGCTTACTACAAGTTGGCGTTGAGGCTTCATCCTGATAAGAACCCTGGTGATGAGGAAGCTAAAGAGAAATTCCAGCAACTGCAAAAGGTGATATCGATTCTCGGGGATGAAGAGAAGCGGACACTTTATGATCAAACTGGATGTGTTGATGATGATGACCTTGCTGGAGATGCTGTTCAGAATCTTCAAGAGTTCTTCAGAACAATGTACAAGAAGGTCACGGAAGCTGATATTGAGGAGTTTCAAGCAAACTATAGAGGATCTGATTCGGAGAAAAATGATTTGATTGATTTGTACAAAAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTGTCGATGAGGCTATAGCTGCTGGAGAACTAAAGGCAACAAAAGCCTACCATAAATGGGCTAAGGAAGTATCTGAAACCAAATCGCCCTCAAATCCTTTGAGAAGGAGGGAAAAGTCTAATAAGCAGTCAGAAACAGATCTGCATGCAATGATAGCACAACGCCAAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAGTTTCAAAATATGGTGGAGGTGATATGCCGGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGAGAAAGCTAGAGACTGGTAGATCCTCTAAAAACTCAAAACAATCCAAGCGGAACCATGATACACTCACCACTACAACTCTTGTGTCAACATTAAAAAACATTTATCAAAGGATCTGCTGCTTCACTGCTTCTTCACCATTTGTCTTCTACCTTGTGGAATTTTCTATGGAGACAGAGAACGGTGACACGAAGTCCAAAAAGATGGAAGACTATGAAGTGATAGAGCAAATAGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTCGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTGGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCGCACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCAGAGCATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCACTTCTACAACCTTATGTTCTTCGTTGTCATAATGCATCATCTAATATTCTTCCAGTATATCCTCTCGTTAATTCAAAGGATAAATCAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACACGTAAGCAATCTTCCTAATGATGCTGTTACAATCTCAACCAGTGCAGAAGACATTATTGAAACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTAACAACGGAATCTCTTTAAAGGGTACACAAGAATCTCCGCATGAGGAACAAATATTTGCAGCTAAACATTTTCATAATTTAGAAGATGACATTAATGCAGTGACCGCAGAAGTTGAAGATGGTTCTTGCAATGAAGGTTTGGATAATGCTGAAGCACGGAGGGAAGATTCGAACCTTGACATCTCTGGTAAATCAACGATGTCCAGTGCAGGCAGTAGCAGCCCTGATAAAGATAAGTCCGTCAACGAGAAAAAACCATCACTAACTGTGAATCCTATTAGGGTTGGACATGATACCGAATGTGGAAACCACTTGAATGTATTTACAGAAGGGTCACATATGAACTGCTTGACATCTGATTGTAATGATGCACTTGTAGTGAAGGATGATGACACAGCTAACAGACACATTCCCTCCATGCATAAAGATGATAACACGGTGGAGGTTGATCAGACAAGTGGCGTTTCGTTGAGTGTAATAACAGAAGTCGATGGTGATGAGACAATCACGACTCTGTTGGACAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTTCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATATCTGCCCAAAAATTTAACACTGAAACCTAG 2862 0.4186 MAQKKKARVSDDEEMKGQRDETSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRTLYDQTGCVDDDDLAGDAVQNLQEFFRTMYKKVTEADIEEFQANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDIVDEAIAAGELKATKAYHKWAKEVSETKSPSNPLRRREKSNKQSETDLHAMIAQRQNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEATRRKLETGRSSKNSKQSKRNHDTLTTTTLVSTLKNIYQRICCFTASSPFVFYLVEFSMETENGDTKSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSALKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPLVNSKDKSRRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDIHVSNLPNDAVTISTSAEDIIETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPARETANNGISLKGTQESPHEEQIFAAKHFHNLEDDINAVTAEVEDGSCNEGLDNAEARREDSNLDISGKSTMSSAGSSSPDKDKSVNEKKPSLTVNPIRVGHDTECGNHLNVFTEGSHMNCLTSDCNDALVVKDDDTANRHIPSMHKDDNTVEVDQTSGVSLSVITEVDGDETITTLLDSPCQQRADALESLLELCAQLLKQDKLEELSGVLRPFGKEAVSSRETAIWLAKSLISAQKFNTET 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01572 953 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Phco2g01572 953 MobiDBLite consensus disorder prediction 1 20 - -
Phco2g01572 953 Gene3D DnaJ domain 7 103 IPR036869 -
Phco2g01572 953 MobiDBLite consensus disorder prediction 242 278 - -
Phco2g01572 953 CDD STKc_Nek 329 584 - -
Phco2g01572 953 MobiDBLite consensus disorder prediction 190 214 - -
Phco2g01572 953 CDD DnaJ 25 77 IPR001623 -
Phco2g01572 953 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
Phco2g01572 953 SUPERFAMILY Chaperone J-domain 20 101 IPR036869 -
Phco2g01572 953 MobiDBLite consensus disorder prediction 608 629 - -
Phco2g01572 953 ProSiteProfiles Protein kinase domain profile. 330 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01572 953 Pfam Protein kinase domain 330 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01572 953 MobiDBLite consensus disorder prediction 609 629 - -
Phco2g01572 953 SUPERFAMILY Protein kinase-like (PK-like) 327 613 IPR011009 -
Phco2g01572 953 SMART serkin_6 330 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01572 953 MobiDBLite consensus disorder prediction 252 276 - -
Phco2g01572 953 Gene3D Phosphorylase Kinase; domain 1 311 409 - -
Phco2g01572 953 FunFam Serine/threonine-protein kinase Nek6 315 409 - -
Phco2g01572 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Phco2g01572 953 Pfam DnaJ domain 24 85 IPR001623 -
Phco2g01572 953 Gene3D Transferase(Phosphotransferase) domain 1 412 638 - -
Phco2g01572 953 SMART dnaj_3 22 80 IPR001623 -
Phco2g01572 953 MobiDBLite consensus disorder prediction 190 213 - -
Phco2g01572 953 MobiDBLite consensus disorder prediction 761 775 - -
Phco2g01572 953 MobiDBLite consensus disorder prediction 776 791 - -
Phco2g01572 953 FunFam serine/threonine-protein kinase Nek6 isoform X2 410 598 - -
Phco2g01572 953 MobiDBLite consensus disorder prediction 758 805 - -
Phco2g01572 953 PRINTS DnaJ domain signature 43 58 IPR001623 -
Phco2g01572 953 PRINTS DnaJ domain signature 60 80 IPR001623 -
Phco2g01572 953 PRINTS DnaJ domain signature 80 99 IPR001623 -
Phco2g01572 953 PRINTS DnaJ domain signature 25 43 IPR001623 -
Phco2g01572 953 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 327 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01572 Phco-Chr2 46013746 46025026 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phco2g01572 Pkinase 2.3e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01572 2 46013746 46025026 Phco2g01572 2 46013746 46025026 ECH
Phco2g01572 2 46013746 46025026 Phco6g00260 6 2508343 2511012 PCT