Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01569 ATGGCTGACCCCTACTCCAATTTTTTCTCATCCTCACCCTTCTTCCGCTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCTCACGCTCCCTATGTCCACAACTTCATCAACCACTCCAAAACCAACGACACCACCTTCTTCCAATACCACCACCACAACCATACTTCTTCCACAACTACTACTTTTTCTTCTTTTCCACCTTCCCCTCCTTTGAGAGAAGAACTACCCCTCTTGAGACTCAGTCCGGCCAAGCAAGAGGAAGAGGAGGAGGGCCTGTCTTGTACTGGAGCCATGGATGTGGAGGAGAGGATCCACATCCACCCCAAAGAGGAAGAAGATGATGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTGCTCTCTTCTTCCTCAGAGACCACTGACAAAGATCATGGGGATGGTGCTGCTGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCCCCCGGGTGCAGAAACAACATTGATCACCCAAGATCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAAAGGAAGCATGGGATTAAACCTTTCATGTGCAGGAAATGCGGCAAGGCTTTTGCGGTGAGGGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGAAGTGGCCATGCAGCCTATGGAATCGATGGTTTTGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAGCAAGATAATGATGATTCCACCCAGTGA 1044 0.4847 MADPYSNFFSSSPFFRFNHHFPSSNPSPHAPYVHNFINHSKTNDTTFFQYHHHNHTSSTTTTFSSFPPSPPLREELPLLRLSPAKQEEEEEGLSCTGAMDVEERIHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01569 347 MobiDBLite consensus disorder prediction 133 160 - -
Phco2g01569 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 289 IPR013087 -
Phco2g01569 347 Gene3D Classic Zinc Finger 247 322 - -
Phco2g01569 347 PANTHER ZINC FINGER PROTEIN WIP2 40 343 IPR043584 GO:0003700|GO:0010468
Phco2g01569 347 FunFam Zinc finger protein WIP2 238 320 - -
Phco2g01569 347 SUPERFAMILY beta-beta-alpha zinc fingers 250 289 IPR036236 -
Phco2g01569 347 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Phco2g01569 347 Gene3D Classic Zinc Finger 184 207 - -
Phco2g01569 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Phco2g01569 347 SMART c2h2final6 185 207 IPR013087 -
Phco2g01569 347 SMART c2h2final6 269 289 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01569 Phco-Chr2 45959402 45961726 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g01569 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01569 2 45959402 45961726 Phco2g01569 2 45959402 45961726 ECH
Phco2g01569 2 45959402 45961726 Phco10g01688 10 39410332 39417400 ECH
Phco2g01569 2 45959402 45961726 Phco6g00266 6 2565774 2567952 PCT