Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01549 ATGGGGACTCCAGAATTCCCAAATCTCGGCAAGCATTGTTCTGTTTCCGATTGCAGACAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTAATCAGATATATTGTTTGGAACACAGAAGTTATATTGAACACAAATGTACAAAACCCAACAAAGAAGATGTCACAGTTGTCATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTCATTCCAGATCAAGATCCCAACATAACTTGGGACCATCATGTTAACATTGATTGTGACCCATCAAATTACGAAAAAGTGACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCCGAGAGGTATTGGTATTCTCCAACACAATCAAATGCAGGGATTGTTTGGAAGACCATTGTTTGAAGCACCGGTTTGGTTCTGATCACAAATGTTCCGGTCCCAAAAAGTTGGAGACAAGTTTTTCATTCATGGGTTTTTTTAATACGACTAAACAAGAGGAGCCAAAGCCCAATTTAACTTCAACCGCATCATCTAACTGGACTTCAAGCTTTCTCAACGTGGCTTCTAATATTCGTGCCTCAGCTGAAGCGAGCATGTCAAAATTGAGCAATGAAATTAACCAAGTTTGGCTGTCAGCTAGAGATGGTGTGGGACAAAGAAATGGCAGTGGAAATAGAAATGATGATCAAGGGGAGCATTGCCGTCAATGTGGTGTAAAGTTTTCCTCTGCGACTTCTTTGGTGGATCATGTGCAAAAAGTTCATGGAAGCAATGAGAAACGATTAGGAGTTAAGAAGATTGATGCATGCCCCAAGTGTAGTAGAGGGTTTGTAGATCCAGTGTCCCTTGCGGAGCACGTTGAGAGGGATCATGGTGGTGGTTGTGGAGCGTAG 873 0.4296 MGTPEFPNLGKHCSVSDCRQLDFLPFTCDRCNQIYCLEHRSYIEHKCTKPNKEDVTVVICPLCAKGVRLIPDQDPNITWDHHVNIDCDPSNYEKVTKKRKCPAPGCREVLVFSNTIKCRDCLEDHCLKHRFGSDHKCSGPKKLETSFSFMGFFNTTKQEEPKPNLTSTASSNWTSSFLNVASNIRASAEASMSKLSNEINQVWLSARDGVGQRNGSGNRNDDQGEHCRQCGVKFSSATSLVDHVQKVHGSNEKRLGVKKIDACPKCSRGFVDPVSLAEHVERDHGGGCGA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01549 290 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Phco2g01549 290 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Phco2g01549 290 SMART c2h2final6 261 284 IPR013087 -
Phco2g01549 290 SMART c2h2final6 225 248 IPR013087 -
Phco2g01549 290 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 251 - -
Phco2g01549 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 253 IPR013087 -
Phco2g01549 290 ProSitePatterns Zinc finger C2H2 type domain signature. 263 284 IPR013087 -
Phco2g01549 290 Gene3D - 2 58 IPR035896 -
Phco2g01549 290 Gene3D - 87 166 IPR035896 -
Phco2g01549 290 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Phco2g01549 290 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Phco2g01549 290 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Phco2g01549 290 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Phco2g01549 290 Gene3D Classic Zinc Finger 188 286 - -
Phco2g01549 290 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Phco2g01549 290 Pfam zinc-finger C2H2-type 226 248 IPR041697 -
Phco2g01549 290 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Phco2g01549 290 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Phco2g01549 290 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01549 Phco-Chr2 45681443 45682915 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g01549 zf-AN1 9.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01549 2 45681443 45682915 Phco2g01549 2 45681443 45682915 ECH
Phco2g01549 2 45681443 45682915 Phco6g00287 6 2819264 2822426 PCT