Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01546 ATGGAAGCTCTATGCTTGTTACACATTCTCCTAGCTTGGTGTCTGTCATGTTTTGAGCTTGTTGGTGCTGAGCTTCAGGAGCAAGCTGTATTACAGGCCATCAACCAAGAGCTTAGAGTCCCTGGATGGGGGGATGCCAACAACTCAGATTACTGCAGTTGGCAAGGTGTCAACTGTGGTAACCACTCAATGGTGGAGAGCTTGGATCTGTCTCATCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCATTGAAGCGGCTTGATCTTTCAAATAATAACTTTGATGGATTGATTCCACGTGCTTTTGGAAATTTATCTGATCTTGAAGTTTTAGATTTGTCTTCAAATAAGTTCCAAGGTTCAATTCCACCTCAGTTGGGTGGTCTCAGAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGTGGGAGAAATACCAATGGAACTTCAGGGCTTAGAGAAATTGCAAGATTTTCAAATTTCTAGTAATCATTTGAGTGGTCTTATACCTTCCTGGGTGGGAAATTTAACTAATCTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTGGGCTCAATTTCTGAGCTTCAAATACTGAACTTGCACTCTAACCAGCTTGAAGGTCCAATACCAGCTACCATTTTCGTTCCAGGGAAGCTGGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGCGAACTTCCTAAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCATTCGAATTGGAAACAACCATCTAGTAGGTACAATTCCTAAGACCATTGGAAATCTTACTAGCCTAACCTACTTTGAAGCTGACAATAATAATCTTTCTGGTGAGGTTGTGTCAGAATTTTCTCAGTGTTCTAATCTTACTCTCTTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCGCAAGACTTCGGACAACTTATGAATCTTCAGGAATTAATTCTTTCTGGAAATAACCTATTTGGCGATATTCCAATATCAATTCTGAGTTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCACCCGGTTGCAGTACTTGCTGTTGGATCAGAATTTCATAAGAGGAGAGATCCCTCATGAAATTGGTAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGCAATATTTTGACTGGAACTATTCCTCCTGAGATTGGGCGCATTAGGAACTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACTTCTGCCCCCTGAATTGGGAAAACTGGACAAACTTGTTTCACTGGATGTTTCAAACAATCGGCTATCAGGTAATATCCCACCTGAACTTAAGGGAATGTTGAGTTTGATAGAGGTGAACTTCTCAAATAATCTGTTAGGAGGCCTGGTGCCAACATTTGTACCATTCCAAAAGAGTCCTAGTTCAAGTTTTTTGGGCAACAAAGGGCTTTGTGGAGAGCCTCTGAACCCTTCATGTGGAACCCTTTATGATGATCACAAGGCTTACCATCATCGGGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGAATTGTTGATGATAGCACCAATGACAACCCAACTATAATTGCAGGAACTGTTTTTGTTGATAATCTCAAACAAGCAGTAGACCTTGATGCTGTCGTTAAAGCAACTCTGAAAGACTCTAATAAGCTCAGCGGCGGAACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCTGGGGTGGTCTTATCTGTTAGGAGATTGAAGTCTGTAGACAAGACAATAATCCACCACCAGAACAAAATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCATGATAATCTTGTGCGTCCCATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCCAATGGAACATTGGTTCAGCTTCTTCATGAATCTACCCGGAAACCTGAATATCAACCTGACTGGCCTTCTAGATTGTCCATTGCCATTGGTGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATCATCCATCTTGACATTTCTTCGGGCAATGTTCTCTTGGATGCAAATTTCAAACCGTTAGTTGGGGAGATAGAGATTTCAAAACTTCTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCACCAGAATATGCATATACTATGCAAGTAACAGCACCAGGAAATGTTTATAGCTACGGTGTTGTTCTGTTGGAGATCCTCACAACTAGATTACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCAGTGAGAGGGGAAACTCCAGAGCAGATATTGGATGCCAGGCTTAGCACAGTTTCTTTTGGTTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTTGCCTTGCTGTGCACTGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTAGTGGAAATGCTACGAGAGATAAAACAAAACTGA 2664 0.408 MEALCLLHILLAWCLSCFELVGAELQEQAVLQAINQELRVPGWGDANNSDYCSWQGVNCGNHSMVESLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGLIPRAFGNLSDLEVLDLSSNKFQGSIPPQLGGLRNLKSLNLSNNVLVGEIPMELQGLEKLQDFQISSNHLSGLIPSWVGNLTNLRLFTAYENRLDGRIPDDLGSISELQILNLHSNQLEGPIPATIFVPGKLEVLVLTQNNFSGELPKEIGNCKALSSIRIGNNHLVGTIPKTIGNLTSLTYFEADNNNLSGEVVSEFSQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNNLFGDIPISILSCKNLNKLDISNNRFNGTIPNEICNITRLQYLLLDQNFIRGEIPHEIGNCAKLLELQLGSNILTGTIPPEIGRIRNLQIALNLSFNHLHGLLPPELGKLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLLGGLVPTFVPFQKSPSSSFLGNKGLCGEPLNPSCGTLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVDDSTNDNPTIIAGTVFVDNLKQAVDLDAVVKATLKDSNKLSGGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLVQLLHESTRKPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKQN 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01546 887 Gene3D Phosphorylase Kinase; domain 1 574 684 - -
Phco2g01546 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 284 886 - -
Phco2g01546 887 SUPERFAMILY L domain-like 46 293 - -
Phco2g01546 887 FunFam Leucine-rich repeat receptor-like kinase 27 128 - -
Phco2g01546 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 576 684 - -
Phco2g01546 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 685 887 - -
Phco2g01546 887 SMART LRR_typ_2 446 469 IPR003591 -
Phco2g01546 887 SMART LRR_typ_2 205 229 IPR003591 -
Phco2g01546 887 SMART LRR_typ_2 157 180 IPR003591 -
Phco2g01546 887 SMART LRR_typ_2 373 397 IPR003591 -
Phco2g01546 887 SMART LRR_typ_2 109 133 IPR003591 -
Phco2g01546 887 SMART LRR_typ_2 85 108 IPR003591 -
Phco2g01546 887 SMART LRR_typ_2 325 349 IPR003591 -
Phco2g01546 887 Gene3D Ribonuclease Inhibitor 25 174 IPR032675 -
Phco2g01546 887 SUPERFAMILY L domain-like 198 511 - -
Phco2g01546 887 Gene3D Ribonuclease Inhibitor 228 518 IPR032675 -
Phco2g01546 887 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Phco2g01546 887 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 129 222 - -
Phco2g01546 887 Gene3D Ribonuclease Inhibitor 175 227 IPR032675 -
Phco2g01546 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Phco2g01546 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
Phco2g01546 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Phco2g01546 887 PRINTS Leucine-rich repeat signature 88 101 - -
Phco2g01546 887 PRINTS Leucine-rich repeat signature 109 122 - -
Phco2g01546 887 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 225 519 - -
Phco2g01546 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Phco2g01546 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01546 Phco-Chr2 45658873 45661793 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco2g01546 PK_Tyr_Ser-Thr 5.7e-26 CL0016