Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01515 ATGGAAGCATCAAGTGATAAAGGGTTGTTGTTGGAATGTGGAAGGAAGTGCAGTCCACCTCCATTTTTGTTGAAGACCTACATGCTTGTGGAAGATCCGGCCACCGACGACGTCGTGTCTTGGAATGCCGACGGAACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTCCCAACACTTTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTAAATACTTACGGCTTTCGTAAAGTTGCAACAAGTAGATGGGAGTTTTTCAATGACAGGTTCAAGAAAGGTGAAAGAGAACAGCTATATGAGATTCGGCGAAGAAAAGCTTGGACCAACAAGCAACAACAACCGAATGTACCAAACCAAGCCACACCTCAAGATTCTGATGAAGATCAAAGGTCCTCATCAACTTCATCATCTTCTGGCCACACTACTCTGGTGGATGAAAACAAGAGGCTTAAGAAGGAGAATGGAGTGCTGAACTCTGAGCTCAGAAGCATGAAAAGAAAGTGTAAGGAACTGCTTGATTTGGTGGCCAAATATTCATCAGATGCAAAAGAGAAAGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGGCTAGATGTTGAAGGAGGGAGGGGGATGAAGAGGAATAGAGCTGAGATAAGTGAAAGCGCAAGCATTATGCTGTCTCAGTCATGCAAATAA 702 0.4544 MEASSDKGLLLECGRKCSPPPFLLKTYMLVEDPATDDVVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFFNDRFKKGEREQLYEIRRRKAWTNKQQQPNVPNQATPQDSDEDQRSSSTSSSSGHTTLVDENKRLKKENGVLNSELRSMKRKCKELLDLVAKYSSDAKEKEEDERPMLFGVRLDVEGGRGMKRNRAEISESASIMLSQSCK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01515 233 Gene3D - 14 112 IPR036388 -
Phco2g01515 233 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01515 233 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 183 IPR027725 -
Phco2g01515 233 MobiDBLite consensus disorder prediction 115 150 - -
Phco2g01515 233 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01515 233 FunFam Heat stress transcription factor B-4 14 112 - -
Phco2g01515 233 Coils Coil 154 195 - -
Phco2g01515 233 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Phco2g01515 233 MobiDBLite consensus disorder prediction 112 158 - -
Phco2g01515 233 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01515 233 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01515 233 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g01515 233 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01515 Phco-Chr2 45080477 45082846 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco2g01515 HSF_DNA-bind 8.9e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01515 2 45080477 45082846 Phco2g01515 2 45080477 45082846 ECH
Phco2g01515 2 45080477 45082846 Phco6g00298 6 2913255 2916844 PCT