Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01512 ATGCAAATGACCCTGCTGCTGCTGATTGCGTTAACAAGAACAGGAACTGCAGCAGATGACCAAGCCCTGCCCGGCTGTCCGAACAAGTGCGGAGATTTTCCGATTCCATACCCCTTTGGCGTAGGTGTGTCAAATGTCACGGGAAAGAACTGTTTCTTGGAGAAAAACTTGGAACTCAACTGCACTGACTCCATTCTATACGCAGGTAACGTCGAAGTTCAGAACATAACCCTCGTAGGTCAAATGGAGATGAATTTCTTCGTCTCCAGTATCTGCAAAATCAACATTTCTAACGGACAAAATGAATCCAACACACCCACACTCCAAACTGCATCCTTCACCATTTCCAGCACGGACAACAAGTTCGTGAGTATAGGCTGCGACACGTACGGCTATCTCAACAGTTACGTCGACCAAGCTAAATACTCAACAGGGTGCTTGACAAGATGTGACAAGAATGAAGCGAATGTGGAAAACATGCAGAGAAATGATGGGAAATACTTTTCGGAATGTAAAACGGGCAAACACAATTGCGCAAGAGCTGAGTATTGTCATGATATTCCTGGCTCTTTTGTATGTTCATGTCCTGATGGACTAATCGGAAATGCAACAAACGAAGGTGGAGGATGCCAACCAAGCAGTCGGCTGATGCATTTACCAAGATCGTCATTGAAACTCTCTGCAAGAGGAGAAACGTCTCAATCCGCCACAATTTTCAATGTTGAGGAACTAAAGAAAGCCACCAACAATTTTGATGAGAGTTTAATCATTGGTAGAGGAGGTTTTGGAACAGTTTTCAAAGGAGTTCTCTCAAATAACAAACTTGTGGCCATCAAAAAGTCCAAAATAGTGGACTCAAGCCAAGTGGAGCAATTCATCAACGAGGTCATTATACTGTCACAAATTAATCACAGGAATGTGGTTAAACTCTTTGGTTGTTGTCTAGAGACAGAAGTTCCCTTATTGGTCTATGAATTTATTGAAAATGACACCCTTTTTGATTATTTGCATAAGCAAGGCCAGGTGCCTAATGTAAGTTGGAAAACGCTTCTAAGGATTGCTACAGAAGCAGCTGGAGCTTTGTCATATCTACACTCGGCAGCTTCCATACCCATCATCCACAGAGATGTGAAAACTGCTAACATACTCTTAGATGAAACTAACACAGTCAAAGTGTCTGACTTTGGAGCTTCACGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGCTATTTAGACCCAGAGTACATGCAATCAGGCCAATTGACTGAAAAAAGCGATGTCTATAGCTTTGGGGTGGTGCTTGTAGAACTTCTAACTGGGAAGGAACCTTTCTCTTTTAACAAGACAGAAGACAAACGAAGTCTTACACTTCATTTTCTTAGTAGCTTGGAAGAGGATTACCTGATTGATGTTCTTCAGAATGATATTCTGGATGAAGAAAATAAGCAGGAGATTATGGAGGTTGCTATTCTTGCTGGCAAGTGCTTGAAACTTAGAGGGGAGGAAAGGCCTAGTATGAAGGAAGTGACAATGGAATTGGAGGGAATAAGCCATATGGACAAACACCCTTGGACCAATACAAGCCAAAATTTTGAGGAGAGTCAATACATGCTTTCTGAGCCACAAAGCACTCGTGAACATGGTGATAGTAGTGGCCAACAAAATACTGGATTTGATAGCTTGAGAGAACTTGAATTAATGAACTATGGTAATGGGAGATGA 1746 0.421 MQMTLLLLIALTRTGTAADDQALPGCPNKCGDFPIPYPFGVGVSNVTGKNCFLEKNLELNCTDSILYAGNVEVQNITLVGQMEMNFFVSSICKINISNGQNESNTPTLQTASFTISSTDNKFVSIGCDTYGYLNSYVDQAKYSTGCLTRCDKNEANVENMQRNDGKYFSECKTGKHNCARAEYCHDIPGSFVCSCPDGLIGNATNEGGGCQPSSRLMHLPRSSLKLSARGETSQSATIFNVEELKKATNNFDESLIIGRGGFGTVFKGVLSNNKLVAIKKSKIVDSSQVEQFINEVIILSQINHRNVVKLFGCCLETEVPLLVYEFIENDTLFDYLHKQGQVPNVSWKTLLRIATEAAGALSYLHSAASIPIIHRDVKTANILLDETNTVKVSDFGASRLVPLDQTEIATIVQGTFGYLDPEYMQSGQLTEKSDVYSFGVVLVELLTGKEPFSFNKTEDKRSLTLHFLSSLEEDYLIDVLQNDILDEENKQEIMEVAILAGKCLKLRGEERPSMKEVTMELEGISHMDKHPWTNTSQNFEESQYMLSEPQSTREHGDSSGQQNTGFDSLRELELMNYGNGR 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01512 581 SMART serkin_6 251 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01512 581 MobiDBLite consensus disorder prediction 540 581 - -
Phco2g01512 581 Pfam Protein kinase domain 255 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01512 581 CDD STKc_IRAK 257 524 - -
Phco2g01512 581 SUPERFAMILY EGF/Laminin 168 202 - -
Phco2g01512 581 FunFam Wall-associated receptor kinase 2 223 326 - -
Phco2g01512 581 ProSitePatterns Protein kinases ATP-binding region signature. 257 280 IPR017441 GO:0005524
Phco2g01512 581 MobiDBLite consensus disorder prediction 540 569 - -
Phco2g01512 581 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 528 IPR045274 GO:0007166
Phco2g01512 581 Gene3D Transferase(Phosphotransferase) domain 1 327 548 - -
Phco2g01512 581 CDD EGF_CA 170 201 - -
Phco2g01512 581 Gene3D Laminin 169 210 - -
Phco2g01512 581 SUPERFAMILY Protein kinase-like (PK-like) 227 522 IPR011009 -
Phco2g01512 581 Pfam Wall-associated receptor kinase galacturonan-binding 26 80 IPR025287 GO:0030247
Phco2g01512 581 Gene3D Phosphorylase Kinase; domain 1 216 326 - -
Phco2g01512 581 Pfam Calcium-binding EGF domain 169 200 IPR001881 GO:0005509
Phco2g01512 581 FunFam Wall-associated receptor kinase 2 327 544 - -
Phco2g01512 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
Phco2g01512 581 ProSiteProfiles Protein kinase domain profile. 251 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01512 Phco-Chr2 44988503 44990579 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Phco2g01512 Pkinase 7.2e-53 CL0016