Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01496 ATGGATCACAGACCGAAATCGAAAGATTCACTCCCTTACTCCACTCTTTTCAATCTCGAGTCTTTGGTGAACTTTCAAATTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGGCAGCCAAGGTGGGGGGATTGCAAATCACAGTAATGGGAATGTGCATGGAAGGGAGTTGAGTTTGTTAAAGAAGAGGAGGTGGTCTCTAAACAGTGACAATGAGGATAGGAGCGGTTTTTATGAGACACACATGACAGAGGAGCGATATCGATCAATGTTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAAGGATACGATGAGTAGTCCTGCCCAAAATCAACCTTCTGTTCCACCTGTGAAAAGCAGCACAGGGTTGAAAGCTCGGAAGTCGGGGAATGAGCGCAGGGGAGGATTACATGCTGTCGAGACTACATCAGAATGGATGAATGATTCGAGTTCCCAGAAACCAGGAAACTACCGTGATGCAGATTTCACGCCACCATATGGCACTGCTGATAGGATTGTGTATGAACCTGCATCTTTGGATATTGGGGATGGAATCATTTACAGGATTCCTCCAATCTATGATAAGTTGGCTGGAGCTCTGAACCTCCCAAGCTTCTCTGATATCCATGTTGAGGATTTTTACTTAAAGGGCACCTTGGATTTGGGTTCATTGGCTGAAATTATGGCTGCTGATAAAAGATTTGGGAATAGAAACCGAGCCGGCATGGGGGAAGCAGTACCCCAATTTGAATCACTGCAGGCACGGCTGAAGGTCATGGGAGCTTCAAATTCTGCTCATACGTTCAGTCTGAAAGTGTCTGATGCTGGTTTGAATTCCTCCATTCCAGAGGGGGCAGCAGGAAGCATTAGGCGATCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTGAAAGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAACAAAAAGTGAAAAAGGACCCTGCTTTGATAGAGAAGGAGGAAATAGAACGATGTGGTAAGATTTGGGTAAATATTGTGAGAAGGGACATACCAAAGCATCATAGGAACTTCACTACTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCCCTTAAATTGACAAGGGCAGCCGGAATGCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAAGAGATGACAGAAGTGAGGAAGAGGGAGGAAAAGGAAGCCGCAGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAGGCAAAGAGGCAACAACAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAACTTTACCCAACGTAGATGAAGATGCAAATGACCAAGATGCAATGGTTGATGACTCTTCAGATGCTAAGCCTGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTTTAAGCAGAGAAGTTTGACTAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACAGATTCACTTCCACCAGATGTTGCTGGGGCAAGTAATATTGATTTGCAAACCCCCTCTACCATGCCAGTGGCATCCACGGTTCGGACACCTGAATTATTTAAAGGGGTTCTGAAGGAATATCAGCTAAAGGGTCTTCAGTGGCTTGTAAATTGTTATGAACAGGGTTTAAATGGTATTCTGGCGGATGAAATGGGACTTGGAAAGACAATTCAGGCCATGGCATTCTTGGCCCATTTAGCTGAGGAAAAAAACATATGGGGACCCTTTTTGGTTGTTGCACCCGCTTCAGTATTGAATAACTGGAATGAGGAACTTGAGCGCTTCTGCCCGGAACTGAAAAGACTTCCATATTGGGGCGGACTTTCAGAACGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTACCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTATCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCGACAAGTATAAGATGGAAGACACTTCTTAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAACATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGGTTTCTGAGCTGACTAGAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATCTCTCTTGCTGAATTGTTTGACAGTAACCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGCAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAATTGGAGGATGTTTATTATTCTGGTGGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTATGAAGAAATTATACAAAATTCAGAGACTTTCAGATCAGCTGTTGGTGGTGGTGTCTCCAGAGAATCTTTTCAGAAACATTTTAGTATTTTTAGACCAGAAAATGTTTTTCGATCTGTATTCTCAGAAGACACTTGCAGTAAAAGTGGAAACCTAGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGGTGATGTTTCTGGCTACTGCTACTTTTGTGGAGAGACTATTATTTTCTATTACTAGAAGGGAACGTAAATTCATTGATGAAGCTGTAGACTTTCTAACGGAGACCATAGATGATGATCCAGACTGTAGTTACCTTGACAAAGAAAAAGTGAGAACGGTTACACGAATGTTACTGGTGCCAACGAGATCTGAGGCTCAGTTTCTGCAGGAAAAATTGCAAACTGGGCCCAGCCATGCTCCTTTTGAGGCCTTGATTGTCCCACATGAAGATAGGCTGTTATCAAATGCTAGGCTTGTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCAATTGGTCTTCACTGTTCAAATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTTGGTTAAGAGGTTGTTTGTGGGATTTGCGCGTACATCTGATTACAATGGGCCTAGAAAGCCAGATGCTCCTCACCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCACCCTGCTCTTCAGTTAACACACAGCATTTTTGGAACTTGTCCACCAATGCGCAATTTTGACCCTTCAAAATTGCTCACTGACTCTGGAAAGCTCCAAACACTTGATATATTACTAAAACGCTTAAGAGCAGGAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAAATGCTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGGTCATCCACTATCCAGGATCGTAGAGACATGGTCAGAGACTTTCAGCATAGGAATGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGGTTAGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACACTGGATCTACAAGCAATGGACCGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCGAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGATCTGTCGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATGCTCAGTTGGAGCAGAAATTAAAGGAGATCCCTATCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGAGGCATTAGGGTAAATGAAGATGGTGATGCATCACTGGAAGATCTAACAAGCTCTGCAGCTCAGGGTACTTCAGATTTTGATCCTGCCGTGGATCCAGAGGGTTCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCGTCGGATAAACACAGGCCAAAGAATTCTCAAAAGATGAGTGAATTTAGTACTGCACCCATGGACAGCGAATTTGATGATGTCGATCCAGTGGGTCAGAAACCCAAGAGACCGAAGAGGGTAAAGAAGAATGTGAACGTTGAAGATGCTTTTACTGGGACTGCTACCATTGTCCCAGAGCAGAACCAATTTCCACCTCCACGTGATTTTAGTGCCGGAAGTTCTAAAGCAGAATCAGGCCAAGACAACTGA 4587 0.4227 MDHRPKSKDSLPYSTLFNLESLVNFQIPQQDDDFDYYGNSSQDESRGSQGGGIANHSNGNVHGRELSLLKKRRWSLNSDNEDRSGFYETHMTEERYRSMLGEHIQKYKRRFKDTMSSPAQNQPSVPPVKSSTGLKARKSGNERRGGLHAVETTSEWMNDSSSQKPGNYRDADFTPPYGTADRIVYEPASLDIGDGIIYRIPPIYDKLAGALNLPSFSDIHVEDFYLKGTLDLGSLAEIMAADKRFGNRNRAGMGEAVPQFESLQARLKVMGASNSAHTFSLKVSDAGLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEIERCGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSETCQREVRMKVSRSLKLTRAAGMRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPNVDEDANDQDAMVDDSSDAKPDEEEDPEEAELKKEALKAAQEAVFKQRSLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFAEIPNSLPPPPFGELEDVYYSGGHNPISYEMPKLVYEEIIQNSETFRSAVGGGVSRESFQKHFSIFRPENVFRSVFSEDTCSKSGNLGFTHLMDLSPQEVMFLATATFVERLLFSITRRERKFIDEAVDFLTETIDDDPDCSYLDKEKVRTVTRMLLVPTRSEAQFLQEKLQTGPSHAPFEALIVPHEDRLLSNARLVHSAYTYIPQSRAPPIGLHCSNRNFYYKMIEELHDPLVKRLFVGFARTSDYNGPRKPDAPHHLIQEIDSELPVSHPALQLTHSIFGTCPPMRNFDPSKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDAQLEQKLKEIPIQVKDKQKKKQPMRGIRVNEDGDASLEDLTSSAAQGTSDFDPAVDPEGSKSSNKKRKAASDKHRPKNSQKMSEFSTAPMDSEFDDVDPVGQKPKRPKRVKKNVNVEDAFTGTATIVPEQNQFPPPRDFSAGSSKAESGQDN 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01496 1528 MobiDBLite consensus disorder prediction 1390 1528 - -
Phco2g01496 1528 MobiDBLite consensus disorder prediction 486 518 - -
Phco2g01496 1528 SMART helicmild6 1236 1319 IPR001650 -
Phco2g01496 1528 MobiDBLite consensus disorder prediction 33 61 - -
Phco2g01496 1528 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Phco2g01496 1528 MobiDBLite consensus disorder prediction 1390 1411 - -
Phco2g01496 1528 Gene3D - 830 899 IPR027417 -
Phco2g01496 1528 FunFam DNA helicase INO80-like protein 1178 1430 - -
Phco2g01496 1528 MobiDBLite consensus disorder prediction 114 129 - -
Phco2g01496 1528 SMART ultradead3 588 783 IPR014001 -
Phco2g01496 1528 Pfam Helicase conserved C-terminal domain 1210 1319 IPR001650 -
Phco2g01496 1528 Gene3D - 1175 1423 IPR027417 -
Phco2g01496 1528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1360 IPR001650 -
Phco2g01496 1528 Pfam SNF2-related domain 607 894 IPR000330 GO:0005524|GO:0140658
Phco2g01496 1528 PANTHER HELICASE SRCAP-RELATED 90 529 - -
Phco2g01496 1528 CDD SF2_C_SNF 1198 1330 - -
Phco2g01496 1528 MobiDBLite consensus disorder prediction 113 173 - -
Phco2g01496 1528 FunFam Putative DNA helicase INO80 564 842 - -
Phco2g01496 1528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 775 IPR014001 -
Phco2g01496 1528 MobiDBLite consensus disorder prediction 491 518 - -
Phco2g01496 1528 Pfam DNA-binding domain 352 480 IPR020838 GO:0003677
Phco2g01496 1528 Coils Coil 428 467 - -
Phco2g01496 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 822 1388 IPR027417 -
Phco2g01496 1528 Gene3D - 588 829 IPR038718 -
Phco2g01496 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 820 IPR027417 -
Phco2g01496 1528 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01496 Phco-Chr2 44768845 44779239 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco2g01496 SNF2_N 7.3e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01496 2 44768845 44779239 Phco2g01496 2 44768845 44779239 ECH