Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01445 ATGTCCCTTGAAGACTCTCTAAGATCTCTCTCCCTCGATTACCTCAACCTCCTTATCAACGGCCAGGCCTTCAGCGACGTCACTTTCAGCGTTGAGGGTCGCCTAGTCCACGCGCACCGCTGCATACTCGCCGCCCGTAGCCTCTTCTTCCGGAAATTCTTCTGCGGCCCAGACCCTCCCTCCGGTCTCGACCCCGCCGGCCCGCGGCTCAACTCGCGCTCCGGCGTTATCCCAGTCAACTCCGTAGGCTACGAGGTCTTCCTTCTCATGCTCCAGTTCCTCTACAGTGGCCAAGTCTCCATCGTCCCTCAGAAGCACGAGGCGCGCCCCAATTGCGGCGAGCGAGGCTGCTGGCACACTCATTGCACCTCCGCCGTCGATCTCGCCCTTGACACCCTCGCCGCCGCCAGATACTTCGGCGTGGAACAGCTTGCATTGCTTACCCAGAAACAACTTGCGAGCATGGTGGAGAAGGCCTCCATAGAGGATGTAATGAAAGTGCTGTTGGCTTCCAGAAAGCAAGACATGCAGCAACTATGGGCCACTTGTTCTCACTTAGTAGCGAAATCAGGTCTTCCTCCCGAGGTTCTAGCCAAGCACCTCCCTATAGACATTGTGGCTAAGATCGAAGAGCTACGTATCAAATCGTCTATGACGCGCCGCTCCTTGGTGCCACACCACCACCACCATCATCCCCACCACCACCACGCCGCACTCGATCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGATTCCTCCGATGTCGAACTCGTAAAGCTCATGGTAATGGGGGAGGGTCTCAACCTCGACGAAGCACTGGCCTTACCCTACGCGGTGGAGAACTGCAGCAGAGAGGTGGTGAAGGCATTGCTGGAACTCGGTGCAGCCGATGTCAACTACCCCTCCGGCCCCGCCGGAAAGACGCCGCTCCACATTGCAGCGGAGATGGTGTCGCCCGACATGGTGGCGGTGCTGCTGGACCACCACGCGGACCCGAATGTGAGAACCGTTGATGGGGTCACGCCTTTGGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTTAAGGGTGCTGTCCCAGGATTGACCCACATCGAACCCAACAAACTAAGGCTGTGTTTGGAGCTTGTTCAATCCGCAGCTCTTGTCATGTCACGAGAAGAAGGCAATGCCAACAACAACAACGCTCCTTCTAACTCCGCAGCACCCATTTACCCTCCCCCCATGAACGAGGACCATAACAGCAGTAGTAGCAGCGGCAACAACAACAACAACATTGGAAATCTGAACTTGGATTCAAGGTTGGTGTATCTCAACCTTGGTGCGACCGCTTCCATGAGTTCCCGGTTGGACGGTGGTGAGGACGAGAGAGAAGCCATGAACACAACCATGTACCACCACCACTCTCATGACTTCTAG 1428 0.5651 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPAGPRLNSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRIKSSMTRRSLVPHHHHHHPHHHHAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNNAPSNSAAPIYPPPMNEDHNSSSSSGNNNNNIGNLNLDSRLVYLNLGATASMSSRLDGGEDEREAMNTTMYHHHSHDF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01445 475 Pfam Domain of unknown function (DUF3420) 191 250 IPR024228 -
Phco2g01445 475 ProSiteProfiles BTB domain profile. 25 103 IPR000210 GO:0005515
Phco2g01445 475 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
Phco2g01445 475 SUPERFAMILY POZ domain 8 154 IPR011333 -
Phco2g01445 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 466 IPR044284 GO:0099402
Phco2g01445 475 Gene3D - 235 356 IPR036770 -
Phco2g01445 475 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Phco2g01445 475 SMART BTB_4 25 156 IPR000210 GO:0005515
Phco2g01445 475 Pfam BTB/POZ domain 16 105 IPR000210 GO:0005515
Phco2g01445 475 CDD BTB_POZ_NPR_plant 8 156 - -
Phco2g01445 475 Gene3D Potassium Channel Kv1.1; Chain A 4 189 IPR011333 -
Phco2g01445 475 MobiDBLite consensus disorder prediction 413 429 - -
Phco2g01445 475 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Phco2g01445 475 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Phco2g01445 475 MobiDBLite consensus disorder prediction 392 429 - -
Phco2g01445 475 SMART ANK_2a 273 303 IPR002110 GO:0005515
Phco2g01445 475 SMART ANK_2a 308 337 IPR002110 GO:0005515
Phco2g01445 475 FunFam regulatory protein NPR5 isoform X2 239 356 - -
Phco2g01445 475 FunFam regulatory protein NPR5 isoform X1 4 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01445 Phco-Chr2 43930706 43933152 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco2g01445 Ank_2 5.6e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01445 2 43930706 43933152 Phco2g01445 2 43930706 43933152 ECH
Phco2g01445 2 43930706 43933152 Phco6g00345 6 3277889 3281283 PCT