Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01434 ATGGGTAGCAGAAGTAGAACGGTAAACGTTGCCAGTAAGGACACCAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAGGATACCATTAACCTTAGCAGAAATCCAGTGTTTAGTCAAATGAAATCAAATAGCCAGGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGTCAATTGTAACATCGGATATAAATCTCTCTGCTGCTATTGCTGGGTCTCAGACATTGGCATTACAGAAAGATGCACAACCAACTCTTGCTTCAACATCTGGTCATCGGGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACTGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGAGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACACTAAGACGTCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGATTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCGCAGTCAATGAGTGGAAATGGTGCTATGGCGTTTGATGTAGAGTACGCTCGATGGTTAGAAGAGCATAACAGGCAAACGAATGAGCTAAGGGCTGCAATAAATTCCCACGCTGGAGATATTGAACTTCGAACAATTGTTGATAATTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAAACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCATTTGGAGCCTTTAACTGAGCAACAATTGATGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTGTCTGAGACATTGGCTAATGGTTCACCCAGCTCATCGGGCTCCTCAGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTACAACAAATGCTTCGGATATTAACAACCAGGCAATCGGCCCGAGCTCTTCTCGCAATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTCTGTGGCTTGCCAGGCCAAGGGAGTGA 1383 0.4584 MGSRSRTVNVASKDTNKVVNGMPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFSQMKSNSQALGADIQFGALNKSIVTSDINLSAAIAGSQTLALQKDAQPTLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01434 460 MobiDBLite consensus disorder prediction 1 37 - -
Phco2g01434 460 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Phco2g01434 460 CDD bZIP_HBP1b-like 175 227 - -
Phco2g01434 460 ProSiteProfiles DOG1 domain profile. 240 457 IPR025422 GO:0006351|GO:0043565
Phco2g01434 460 PANTHER TRANSCRIPTION FACTOR TGA9 126 460 - -
Phco2g01434 460 MobiDBLite consensus disorder prediction 146 177 - -
Phco2g01434 460 Coils Coil 194 221 - -
Phco2g01434 460 FunFam BZIP family transcription factor 174 223 - -
Phco2g01434 460 MobiDBLite consensus disorder prediction 1 19 - -
Phco2g01434 460 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Phco2g01434 460 SMART brlzneu 171 234 IPR004827 GO:0003700|GO:0006355
Phco2g01434 460 Pfam Basic region leucine zipper 171 217 IPR004827 GO:0003700|GO:0006355
Phco2g01434 460 MobiDBLite consensus disorder prediction 119 145 - -
Phco2g01434 460 MobiDBLite consensus disorder prediction 119 177 - -
Phco2g01434 460 Gene3D - 174 226 - -
Phco2g01434 460 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Phco2g01434 460 Pfam Seed dormancy control 258 333 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01434 Phco-Chr2 43693314 43698605 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco2g01434 DOG1 5e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01434 2 43693314 43698605 Phco2g01434 2 43693314 43698605 ECH