Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01429 ATGGATGGCTGCTCAAACGTGGTTGTCGACGAAGAAGGGTTAGAGGAAAAAGGGTTTGAGGGGGAAGGGTTTGGGAGAGAAGAACAAGCAAAAGCTCCTTATTTTTCCCCCACACGCACCCTCTTCAATTCAAACTCTGATCCAAGTTTCCATCTCCTTCTCACAGTATTTGTTTTGCCATATTCTCCTCCTTATCGATTGATCCCTCGTGTATTGCAAGCCATGGATCAAGCAGAGCTTGGGCGAGTTTTTCAAATGTTTGATCGAAACGGGGATGGGCGAATCACACGGAAGGAACTGAGTGACTCGTTGAAAAACCTGGGAATCACGATCTCGGAGCAAGACTTGACCCAAATGATCGAGAAAATCGACGTAAACGGAGACGGGTACGTGGACAAGGACGAGTTTGGAGAATTGTACAATGCGATAATGTACGAGAAAGATGACGAGGAGGATATAAGGGAAGCATTCAACGTGTTCGATCAAAATGGAGATGGGTTCATAACGGGAGAGGAATTGAGCGCGGTGTTGTGTTCTTTGGGGCTAAAGCATGGGAAATCCGTTGAATATTGCATGAGCATGATCAAGAAAGTGGACGTGGATGGCGATGGAATGGTTAACTTCAAAGAGTTTAAGCAAATGATGAAGGATGGAGGGTTTGTTGTGCATGGCTAG 675 0.4578 MDGCSNVVVDEEGLEEKGFEGEGFGREEQAKAPYFSPTRTLFNSNSDPSFHLLLTVFVLPYSPPYRLIPRVLQAMDQAELGRVFQMFDRNGDGRITRKELSDSLKNLGITISEQDLTQMIEKIDVNGDGYVDKDEFGELYNAIMYEKDDEEDIREAFNVFDQNGDGFITGEELSAVLCSLGLKHGKSVEYCMSMIKKVDVDGDGMVNFKEFKQMMKDGGFVVHG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01429 224 CDD EFh 152 216 IPR002048 GO:0005509
Phco2g01429 224 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Phco2g01429 224 CDD EFh 79 136 IPR002048 GO:0005509
Phco2g01429 224 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Phco2g01429 224 Gene3D - 150 217 - -
Phco2g01429 224 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Phco2g01429 224 FunFam Calmodulin-like protein 3 75 144 - -
Phco2g01429 224 Gene3D - 66 149 - -
Phco2g01429 224 ProSiteProfiles EF-hand calcium-binding domain profile. 186 221 IPR002048 GO:0005509
Phco2g01429 224 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Phco2g01429 224 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Phco2g01429 224 SMART efh_1 190 218 IPR002048 GO:0005509
Phco2g01429 224 SMART efh_1 152 180 IPR002048 GO:0005509
Phco2g01429 224 SMART efh_1 115 143 IPR002048 GO:0005509
Phco2g01429 224 SMART efh_1 79 107 IPR002048 GO:0005509
Phco2g01429 224 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 151 216 - -
Phco2g01429 224 SUPERFAMILY EF-hand 63 217 IPR011992 -
Phco2g01429 224 Pfam EF-hand domain pair 79 140 IPR002048 GO:0005509
Phco2g01429 224 Pfam EF-hand domain pair 150 216 IPR002048 GO:0005509
Phco2g01429 224 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Phco2g01429 224 PRINTS Parvalbumin signature 198 211 - -
Phco2g01429 224 PRINTS Parvalbumin signature 161 177 - -
Phco2g01429 224 PRINTS Parvalbumin signature 139 157 - -
Phco2g01429 224 ProSitePatterns EF-hand calcium-binding domain. 199 211 IPR018247 -
Phco2g01429 224 FunFam calmodulin-like protein 3 146 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01429 Phco-Chr2 43577599 43579049 Transposed