Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01415 ATGCACCACTTTGCCATGGACAACTCTCACCTTCTTCAATTCCTTCCCAACACCACCACCACCACCACCACCAACCCCTTCTTCCACACTGCACCACACACCACCAGCATCATGCACCAACACCACACCCTCTCTAATAACTCCTCCTCCAATAACTTCTACCCCTTTCATGTCTCTCAAATTACCCCAACACCCTCCCACCAAGATAGAGCCCTTGCTGCCATGAAGAACCACAAGGAAGCTGAGAAGAGGAGGAGGGAACGAATCAACTCCCACCTCGATGAGCTTCGCACTCTTCTCCCTTGCAATTCCAAGACAGACAAGGCTTCGCTTCTGGCGAAGGTTGTGCAGCGAGTGAAGGAGTTGAAGCAGCAGACGTCGGAGATAACGGAGCTGGAGACGGTTCCATCGGAAACTGACGAGATCACGGTGCTCTCCACGGGCGGGGACTACGGCGGCGATGGGAGACTGGTATTCAAGGCCTCGCTGTGCTGTGAGGACCGCTCCGACCTCATCCCAGACCTCATAGAAATCCTGAATTCGCTTCACCTGAAAACCCTCAAAGCAGAAATGGCCACGCTCGGAGGAAGAACGCGCAACGTTCTCGTGGTGGCTGCAGATAAAGAACACAGCATCGAATCCATCAATTTCCTTCAGAACTCGCTGAAGTCCTTGCTAGACAGGTCCAATTCCAGCGACAGATCAAAACGACGCCGTGGCCTAGACCGAAGGCTAATGTCTTAA 744 0.5309 MHHFAMDNSHLLQFLPNTTTTTTTNPFFHTAPHTTSIMHQHHTLSNNSSSNNFYPFHVSQITPTPSHQDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDYGGDGRLVFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESINFLQNSLKSLLDRSNSSDRSKRRRGLDRRLMS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01415 247 Coils Coil 79 99 - -
Phco2g01415 247 MobiDBLite consensus disorder prediction 229 247 - -
Phco2g01415 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Phco2g01415 247 MobiDBLite consensus disorder prediction 228 247 - -
Phco2g01415 247 SMART finulus 79 128 IPR011598 GO:0046983
Phco2g01415 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 130 IPR036638 GO:0046983
Phco2g01415 247 PANTHER TRANSCRIPTION FACTOR BHLH30 41 241 IPR045847 GO:0003700|GO:0006355
Phco2g01415 247 Gene3D - 68 134 IPR036638 GO:0046983
Phco2g01415 247 FunFam transcription factor bHLH30 68 131 - -
Phco2g01415 247 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Phco2g01415 247 CDD bHLH_AtAIG1_like 68 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01415 Phco-Chr2 43393611 43394863 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g01415 HLH 4.3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01415 2 43393611 43394863 Phco2g01415 2 43393611 43394863 ECH
Phco2g01415 2 43393611 43394863 Phco6g00405 6 3855230 3856522 PCT