Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01405 ATGCACTCAGACAAATTCCTGCTCGGTTTCATGGAGGCTTACATCGTCGGCGTAGAGAACTATTGGGCCACCATCCGCGGCCGCTCCTTCGTCCTCCTCCTCCGTGAGCCCTACAACATCCACGACGCCAACGCCATCAACGTCAGCAACATCCACGGTCACACCATCGGCTACATTGAACGCCCCGTCGCCGCCATCCTCTCCCCTCTCATCGATGAAGACATCATCGCCGTCGAAGCCATCGTACCCGAGGCCCGCAAAAGCTGGCGAATGCTCTGCCAAATCCACATCTTCGCCCGCCTCCACGCCTTTGAAGCCGTCAAAGAGGCCATCTCCCGTTCTTCCCGCAAACTCATCACCGCGTCCGAAGCCGCCTTCACCCTCTCTGACTCCGCCGCCGTTAAGGCTACCAAGGCGCAGAAGAAGTTCATGACCGTCGACGCCATTTTTGACCTTGTCAACAGCAACCTCACCAACAAGAACCGAGCCATCGATATCTTGGAGCCTCCCAGGAGCATCATCAGAACCGAGCTTCTCCCTCATCAGAAGGAGGGTCTGGCGTGGCTCGTTCGCAAAGAAAAGGCTGATGACTTGCCACCCTTTTGGGAAGAAAACGATGGCATGTTCGTAAATATCTTAACCGATTATCAAACCAATATAAGGCCTGACCCTTTGCGAGGTGGCGTCGTCGCCGATGGGATGGGGTTAGGAAAGACCTTAACTTTGCTTTCTCTGATTGCTTTTGATAAAAGGAGCCAAATGGGTGTCTCTAAAAAATGGAGAACGGACAGAAAGTCGGTTTCTTTAGAGAAGCGACGCAGGAATGAAGGTGAGTGCTCCATCGGAAGCGGAGTGAGAACAAATGCAACGTTGGTGGTGTGTCCTCCTTCTGTTATGTCGGCATGGATAACGCAATTGGAGGACCACACTGTGCCTGGTGGATTGACGACTTACATGTATTACGGGGAAAGAAGGACACGGGATACTGAGGAGCTTAAGAAGTATGATTTGGTGTTGACTACTTACTCTACTCTGTCTAATGACTCGGAGGAGATGCCGGCAAAGGGAATGGAGTGGCGGAGAATTATATTGGACGAAGCACACTCCATCAAGAATTTCACGGCCAAACTGAGTAAGGCGGTTTTCAACTTAAAAGGTAAGTACAGATGGGCAGTCACAGGGACACCGATTCAAACTGGTTGCATTGATTTGTATTCTTTCATGGTCTTTTTGCGGTTTGATCCGTTTTCAATACGATCACATTGGAGAGCGTTGGTGCAACGCCCTCTTAATCAGGGCTTAGATCAAGGGCTCACAAGATTGCAGGTTTTGATGGAAGCAATTGCTTTGCGAAGAACAAAAGATATGGCATTGGTGTCTCTACCACCTAAAACCGTTGAGATTTGTTATGTTGAGCTTTATATGGAAGAACGCCAGCTGTATGATCAGGAGAAAGAGAAAACAAAGGCATTGTTGAGAAGAAGTTTTATCTATGAGGATAATGGACTTTCCCAGTATACTGAGATGCTAAGTAGTATTCTAAGACTTCGCCAAATCTGTGTTGATTTGAAATTGTGTAAATTTCAGTCACAACGCAGCCTTACAAATATTGAAGGAGAAGCAGTTGTTTCTTATAATCCTGAATTGCTGCAAACATTACTTGGGCAGCTGCAAGAAGGTGAAGATTTTGAATGTCCAATTTGCCTGTCTTCTCCAATGGATATTGTGATCACACGTTGTGCTCACATTTTCTGCCGTGACTGTATCCTGAGATCTCTAGAAACGAGAAGTCGTTGTCCTCTTTGCCGGCGACAACTCTCGGAATCTGACTTGTTCTCACCCCCTCCCCAGCCAGAGACAAACAGTGCTGAACCGAGCTCAGCATCAGAAACACCGTTATCGTCCAAGGTTTCTACCCTGATGAAATTTCTTAATGAATCAAGGGACCAACATCCAGCTGTAAAGTCAGTTGTATTTTCACAATTTCGAAAGTTGCTGCTGTTACTTGAAGAGCCTCTGAATGCAGCTGGTTTCAAGACTTTGCGTCTTGATGGGTCAATGAATGCTAAACACAGAGCCACTGTTATTGAGCAGTTTCAAGTCCAAGAAAGTGATGGACCAACTGTTCTGCTGGCAAGCCTCAGGGCTTCAAGTGCAGGTATAAATCTCACAGCTGCCTCTAGACTCTACTTTATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGATCGTGTCCACCGCATTGGACAGAAACAGCCCGTGAAGATTGTTCGATTCATTGCTCAAAACAGCATTGAAGAGAAACTATTGGTGTTGCAGGAAAGGAGGAAAGAACTGTCCACGGAAGAACCATCTGAGATGGGATCAAAGGGCGTGGGCATAAAAGATATTAAATTCCTTCTAGAATCCTAG 2421 0.4738 MHSDKFLLGFMEAYIVGVENYWATIRGRSFVLLLREPYNIHDANAINVSNIHGHTIGYIERPVAAILSPLIDEDIIAVEAIVPEARKSWRMLCQIHIFARLHAFEAVKEAISRSSRKLITASEAAFTLSDSAAVKATKAQKKFMTVDAIFDLVNSNLTNKNRAIDILEPPRSIIRTELLPHQKEGLAWLVRKEKADDLPPFWEENDGMFVNILTDYQTNIRPDPLRGGVVADGMGLGKTLTLLSLIAFDKRSQMGVSKKWRTDRKSVSLEKRRRNEGECSIGSGVRTNATLVVCPPSVMSAWITQLEDHTVPGGLTTYMYYGERRTRDTEELKKYDLVLTTYSTLSNDSEEMPAKGMEWRRIILDEAHSIKNFTAKLSKAVFNLKGKYRWAVTGTPIQTGCIDLYSFMVFLRFDPFSIRSHWRALVQRPLNQGLDQGLTRLQVLMEAIALRRTKDMALVSLPPKTVEICYVELYMEERQLYDQEKEKTKALLRRSFIYEDNGLSQYTEMLSSILRLRQICVDLKLCKFQSQRSLTNIEGEAVVSYNPELLQTLLGQLQEGEDFECPICLSSPMDIVITRCAHIFCRDCILRSLETRSRCPLCRRQLSESDLFSPPPQPETNSAEPSSASETPLSSKVSTLMKFLNESRDQHPAVKSVVFSQFRKLLLLLEEPLNAAGFKTLRLDGSMNAKHRATVIEQFQVQESDGPTVLLASLRASSAGINLTAASRLYFMEPWWNHAVEEQAMDRVHRIGQKQPVKIVRFIAQNSIEEKLLVLQERRKELSTEEPSEMGSKGVGIKDIKFLLES 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01405 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 452 IPR027417 -
Phco2g01405 806 ProSitePatterns Zinc finger RING-type signature. 580 589 IPR017907 -
Phco2g01405 806 CDD RING-HC_HLTF 560 611 - -
Phco2g01405 806 Coils Coil 765 785 - -
Phco2g01405 806 SMART ultradead3 174 433 IPR014001 -
Phco2g01405 806 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 414 IPR014001 -
Phco2g01405 806 SMART ring_2 565 602 IPR001841 -
Phco2g01405 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 786 IPR027417 -
Phco2g01405 806 CDD SF2_C_SNF 630 763 - -
Phco2g01405 806 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 636 806 IPR001650 -
Phco2g01405 806 SMART helicmild6 667 752 IPR001650 -
Phco2g01405 806 Pfam HIRAN domain 12 95 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phco2g01405 806 Pfam Zinc finger, C3HC4 type (RING finger) 562 607 - -
Phco2g01405 806 Pfam Helicase conserved C-terminal domain 636 752 IPR001650 -
Phco2g01405 806 Gene3D - 462 798 IPR027417 -
Phco2g01405 806 Pfam SNF2-related domain 181 523 IPR000330 GO:0005524|GO:0140658
Phco2g01405 806 Gene3D - 215 453 IPR038718 -
Phco2g01405 806 SUPERFAMILY RING/U-box 548 609 - -
Phco2g01405 806 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 145 803 - -
Phco2g01405 806 Gene3D - 2 118 - -
Phco2g01405 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 611 IPR013083 -
Phco2g01405 806 SMART HIRAN_2 8 101 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phco2g01405 806 MobiDBLite consensus disorder prediction 610 632 - -
Phco2g01405 806 ProSiteProfiles Zinc finger RING-type profile. 565 603 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01405 Phco-Chr2 43193344 43197076 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco2g01405 SNF2_N 2.3e-68 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01405 2 43193344 43197076 Phco2g01405 2 43193344 43197076 ECH