Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01400 ATGAAGTCTTGGTCAGTGGATGAGTGGAGGGAGTACTTTGTGTCTTCGAATTCGGATATATTTGAGATAATTGAGAACGCGATAATCGTGGCGGCTTCGGATTGTCCGAAGGAGTTTAGAGTGAAGAGGGATACGATTGCGGAGAGGCTGTTCTGTTCCAGCTTGACTCGCTGTGCAGGGTGTGACCATGTGGAGTTGGCTGCGAGGGGAGTTGGTAAAGAGAGTGATGACGGGGGTTGCCAGAATGCGGTAAAAAGAGATGGGGGTGAGTTCGCAGGAGCAAGCAAAGAGAGCAAGGTCAATGAAGGTGGTGATGAGGATGCGGAGATTGATGTGAACGGTGTTAGCAACTATAGTTTTGGTGAGGCTGAGGCATTAACTGATGAGATGGATGAAGAGACTCAGTATGTTGGGGAGATTTTGAGGATCAAAGATGTTCTGCTTAACCGTGATGAAGAGTCTGAGTCTGTGTTATTTGAATCGTTGAGGAGGCTTCAACTGATGGAGCTCACCGTGGATTGTCTTAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGAAAACGCGGATCAAAGGATATTCGTCAACTTGCAAAGACACTTATCGATGGCTGGAAACAAATGGTTGATGAATGGGTGAAGGCCACTGCTACTACAGCTATTGCCGCTTCAGATGAAGGCACACCTGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGGACTTCCATCACCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGGTTCCATAGAACTTTCGCAGTTCTTTGATGGCATGGACGATGATGGAAATCCTCGACCAAGTGGCCCATCCCACAAGAACCGTGACAATAATAGCAGAAAGCCAGCCATCCCTAACAGGGAGGATAAGAGTCAACAAGCCAAGAGAAATGATGCTGATGTGCCCTTGAGGCCAAATAAGCCCGTAACCTCGGATTCTGGCCCTGGCAGACCCCTCCAATACAATATGCAAAGAAAAAGTAATGTGGAGCCAAAGATTCAGCAAAAAGTAGAGAACAATTCAATCACAAGGAGGCCTCCCATTGGTCATCTAGATAAATCCATGCATTCAGATGATGCGGCTGTCCAAGTAAAGCTAGAAGCCACCAAGAGGAGACTTCAGGAGAGTTATCAACAAGCTGAAAAAGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAATGATCTCCCGAAGCATGTTAACTACCGAAATCCACATCCCAAGCCCGGTTATCACAATAGGAACCGGGCTAATACTCGAAGGTAG 1311 0.4638 MKSWSVDEWREYFVSSNSDIFEIIENAIIVAASDCPKEFRVKRDTIAERLFCSSLTRCAGCDHVELAARGVGKESDDGGCQNAVKRDGGEFAGASKESKVNEGGDEDAEIDVNGVSNYSFGEAEALTDEMDEETQYVGEILRIKDVLLNRDEESESVLFESLRRLQLMELTVDCLKATEIGKAVNPLRKRGSKDIRQLAKTLIDGWKQMVDEWVKATATTAIAASDEGTPDSVNPSVVDDEEEEGLPSPPMDEGAFFVAPTGSIELSQFFDGMDDDGNPRPSGPSHKNRDNNSRKPAIPNREDKSQQAKRNDADVPLRPNKPVTSDSGPGRPLQYNMQRKSNVEPKIQQKVENNSITRRPPIGHLDKSMHSDDAAVQVKLEATKRRLQESYQQAEKAKRQRTIQVMEINDLPKHVNYRNPHPKPGYHNRNRANTRR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01400 436 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 422 IPR044805 -
Phco2g01400 436 CDD TFIIS_I 139 211 - -
Phco2g01400 436 MobiDBLite consensus disorder prediction 268 347 - -
Phco2g01400 436 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Phco2g01400 436 MobiDBLite consensus disorder prediction 222 256 - -
Phco2g01400 436 MobiDBLite consensus disorder prediction 409 436 - -
Phco2g01400 436 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Phco2g01400 436 SMART TFS2_5 137 212 IPR003617 GO:0005634
Phco2g01400 436 MobiDBLite consensus disorder prediction 327 347 - -
Phco2g01400 436 MobiDBLite consensus disorder prediction 280 316 - -
Phco2g01400 436 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 217 IPR035441 -
Phco2g01400 436 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 223 IPR035441 -
Phco2g01400 436 Coils Coil 377 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01400 Phco-Chr2 43123871 43126561 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco2g01400 Med26 1.6e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01400 2 43123871 43126561 Phco2g01400 2 43123871 43126561 ECH
Phco2g01400 2 43123871 43126561 Phco6g00453 6 4244904 4251427 PCT