Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01395 ATGCCTTCGAGCTCGAATTCGAAGCAGAAAAGGAAGCAATCGAAGGCGCAGCAGCAAAACTCACCGTTGTCGTCGAATGCCACCACAACGCCTTCTAGAACACAGCCACAACAAGCACAAGAGCATGCCTCTTTATGCGTAGAAGCTTCTCAAAAGTTCCCTTCTCTCATCGCTGAATCCGCGTTTGTCGCCGAAATCATCCATGTCGACGACGCCGTTCCCCTTTTCAAGGGCTTCAGAATTTGGCTCTCCGAACCTTCCATGCTCTCCTCCTCTCTCTCCCCGGGTTCCATGGTCTCGGTGTCTGTTCCATCTTCAGACGAGAAAAATTCACAATTACATAGTTTTCCCCTAGTGTCATTGGCTAATGAATGTGCCAAATGCAATGGACTGGAAATTGGGAAGGCAGTTAATGATGATGATGCAGGGAACTACTTTGTGCTTGCAACGGTGTTTCCTGCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCCAACCTTTACTATACCATGGGATGTCCTCCTGTGGGAACAAGTGTGTTTGTTTGTAAATTACAGAAACAACTCTTCCCTACTCCTGCCACTGGGAGCAATCAACAGCATTGTATGGAAAATAATTGTCTACCTATTAATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAAAAGGGGCTGCCATTGAAGTTTAATAATTTTTCCTCATTGGATGTGTCTAAGGTGAAATCTCATGTCCAATTTGAGAATGACGCTGTTGCTTCTCCTGCAACACCTTCTTATGGATCAAAGTTTTCTAATGCTAGTGGTCTGTCTTCTCCACAATTTGACAATTCAGCATCTAGTGTGCCAAATCAGAAGAGTCAATCTCTGATTTCATCTGATGTCAGCTTAGCATTAAGGGATGAAAATTCTAAACAATCACTTGAGACATGGGCAACTTCATGGTTATATTCTCGATCTTTACTTCTAGGAAATCTTATCAGTGTTCCAATGTTTTCAGAGTGCTTTTTCCAAGTGATAGGAGCTAAAAAGCAGCCAGTTACCAAATCTGATCATTTTCCATCAAATGGAAGCAGTGATTTATATCCTGAGGATTCTGATATATCAGATAGTGTAAATCAGGCTTTCACTGTTAATTACGAAACAAAGGTATTTTTATCTCTGCCATCAAGTGCAGCATCTGAAGAGCCAATTCAAAGGGACATACAATGTGTGAAATTAGATCACAAAGTCGGTAATGGTAGCTTACCAGATAGAATCTCTAAATTGGGTGGTCTATCCAAAGAATATACACTTCTAAAGGACATAATTACTTCGTCGCTGAATGATGCTTTATCAAGTTTTGGTCTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCAACTGGTACAGGAAAGACTTCCCTGGCTCAACTATGTACTCATGATGTGGGAGTCAAACTTTTCCCAATAAATGGACCTGAAATTGTTACCCAATATTATGGGGAAAGTGAGCAAGCATTGCATAAAGTTTTTGATTCAGCCATTGAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGAAGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCGACTTTATTGAATATGATGGATGGAATTAGTAGAACTGAAGGGTTACTTGTAATCGCCGCCACTAACCGCCCTGACCATATTGAGCCAGCTCTCAGACGACCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTTCCATCCCCCAAACAACGTTCAGATATTTTGCTCACTCTTCTCAATGAAATGGATCATTGTCTCTCTGAGGTACAAATTCAACAACTTGCCACAGTCACTCATGGTTTTGTGGGTGCTGATCTAGCTGCACTTTGCAATGAGGCAGCCTTGAATTGTCTGCGACGTTATGCCAGCTTTAAGAAGACTTATGATTCTTGTTCTGATTATATAACCGATAAACCTGTTCTGATGAATGGTGTAACAAACTCAATAGATCATTTGGATGAGGCAACTTCATCTGTTTCAGATATGGCCACCAGTCCTGTATTACGTCCTTGCAAGATAAGAACTTATGAAACTACAGAAATAATTCCTGATAGTGTTGTTGAAGAGGAGCAGATTTTGAAAGTAAGCTTTGAAGATTTTCAAAAGGCCAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGTGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACACCATGATGCATTCGACCGTATTGGAACTCGCCCTCCTACAGGTGTACTGATGTTTGGGCCTCCAGGTTGTAGTAAGACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGTTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCCGTCAGATCATTATTTGCAAAAGCAAGGGCCAATGCTCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAGAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGACCAGGGCGCTTTGACCGTCTGCTATATGTTGGACCTCCGAATGAGGTGGATAGGGAAGAGATATTTCGCATTCATCTGCGTAAAATCCCATGCGGTTCTGATGTCAGCCTTAGAGAACTAGCTCTACTCACAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGATGGCAATCGAACAGATCCAGCCATCAGATGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCCACAGCTGTTATATAAAGGATGAATTGAATGATATGCAGTGCGACACTAAACCTATCCAGTTCAACGTTTGGAAGTTCATAAAATCTTGCACGTTGTTCCTCTATCAGACTCCAGTTGCCATCTTCAATTTAAGAACTGCTCGAAGTAGTTAA 3180 0.4211 MPSSSNSKQKRKQSKAQQQNSPLSSNATTTPSRTQPQQAQEHASLCVEASQKFPSLIAESAFVAEIIHVDDAVPLFKGFRIWLSEPSMLSSSLSPGSMVSVSVPSSDEKNSQLHSFPLVSLANECAKCNGLEIGKAVNDDDAGNYFVLATVFPASKVLKNGVRLSSNLYYTMGCPPVGTSVFVCKLQKQLFPTPATGSNQQHCMENNCLPINNCKELYLQLVPSKKGLPLKFNNFSSLDVSKVKSHVQFENDAVASPATPSYGSKFSNASGLSSPQFDNSASSVPNQKSQSLISSDVSLALRDENSKQSLETWATSWLYSRSLLLGNLISVPMFSECFFQVIGAKKQPVTKSDHFPSNGSSDLYPEDSDISDSVNQAFTVNYETKVFLSLPSSAASEEPIQRDIQCVKLDHKVGNGSLPDRISKLGGLSKEYTLLKDIITSSLNDALSSFGLRTTRGVLLHGPTGTGKTSLAQLCTHDVGVKLFPINGPEIVTQYYGESEQALHKVFDSAIEAAPAVVFIDELDAIAPARKEGGEELSQRLVATLLNMMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRSDILLTLLNEMDHCLSEVQIQQLATVTHGFVGADLAALCNEAALNCLRRYASFKKTYDSCSDYITDKPVLMNGVTNSIDHLDEATSSVSDMATSPVLRPCKIRTYETTEIIPDSVVEEEQILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFDRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVSLRELALLTDGCTGADISLICREAAVAAIEESLDASVITMKHLKMAIEQIQPSDVHSYQKLSTKFQRAVHSCYIKDELNDMQCDTKPIQFNVWKFIKSCTLFLYQTPVAIFNLRTARSS 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01395 1059 Gene3D - 411 589 IPR027417 -
Phco2g01395 1059 Gene3D - 742 993 IPR027417 -
Phco2g01395 1059 Gene3D - 918 988 - -
Phco2g01395 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 659 IPR027417 -
Phco2g01395 1059 FunFam spermatogenesis-associated protein 5-like protein 1 918 1000 - -
Phco2g01395 1059 FunFam Calmodulin-interacting protein 111 589 745 - -
Phco2g01395 1059 ProSitePatterns AAA-protein family signature. 887 905 IPR003960 GO:0005524|GO:0016887
Phco2g01395 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 997 IPR027417 -
Phco2g01395 1059 CDD RecA-like_CDC48_r2-like 756 915 - -
Phco2g01395 1059 FunFam calmodulin-interacting protein 111 isoform X1 742 917 - -
Phco2g01395 1059 SMART AAA_5 454 590 IPR003593 GO:0016887
Phco2g01395 1059 SMART AAA_5 781 919 IPR003593 GO:0016887
Phco2g01395 1059 FunFam Putative vesicular transport protein (CDC48) 409 587 - -
Phco2g01395 1059 MobiDBLite consensus disorder prediction 1 43 - -
Phco2g01395 1059 Pfam ATPase family associated with various cellular activities (AAA) 458 587 IPR003959 GO:0005524|GO:0016887
Phco2g01395 1059 Pfam ATPase family associated with various cellular activities (AAA) 785 916 IPR003959 GO:0005524|GO:0016887
Phco2g01395 1059 Gene3D - 590 732 - -
Phco2g01395 1059 PANTHER AAA-FAMILY ATPASE 73 1006 - -
Phco2g01395 1059 Pfam AAA+ lid domain 939 984 IPR041569 -
Phco2g01395 1059 Pfam AAA+ lid domain 612 644 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01395 Phco-Chr2 43019434 43028649 Dispersed/Transposed