Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01393 ATGAAGGAGGAGGATTCCAATTGGTTTTCGCGATGGGAAGAGGAACTCCCACCGCCAGAGGATCTCATGCCCCTATCGCAAACCCTAATCACGCCCGATCTAGCCATGGCCTTCGACATCAGAAACCCCCACACCACCAACCTCAACACCGCGCAACAACATCAACACCAGCAACAACAACCACCGCAACAACAACAGCAACAACCTTCCAACCCTTCCTCGCTCCCCAACCCCCAACAACCCACCTCCGCCGACTTCGCCGACTCCGGCGAGCTCGGCTCCGGCACTGCCGGTGAGGAGCCCGCTCGAACCCTCAAGCGCCCGCGCCTTGTGTGGACCCCACAACTCCATAAGCGCTTCGTCGACGCCGTCGCGCACCTCGGCATAAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCAGAGAAAACGTTGCCAGCCACTTGCAGAAGTACCGTCTCTATCTCAAACGCATGCAGGGGATATCTGCCGCCGGACCCGGTGGTCCCGGAGGCGGCGCCGGAGGCGCCGTCGCCGACCCTGCCACTGACCACCTGTTCGCCAGCTCCCCGGTGCCGGCTCATTTCCTGCACCCTGCGACGAGGCCAAATTCGGATCACTTCCTTCCGTTTGTGCCGGTGCCGGCGCTCCACCACCACCAGCAGCAACAGCAGCAGATGGCCGCGGCGGCGCAGTACCATAGGCAGGTGGGGCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAACCCGTTCATGTCTAGGCCGAATCTTCAGAGGATGGGTGGGGGTGGGGGAGGTCCTGTGCATAACCACCACTCTGTGAGTGGCTATGTGGAGGATATGGAATCTGCTAATGCTGCATCTGGAGGTAGAAAGGTTCTTACCCTGTTTCCAACTGGAGATGATTGA 930 0.5989 MKEEDSNWFSRWEEELPPPEDLMPLSQTLITPDLAMAFDIRNPHTTNLNTAQQHQHQQQQPPQQQQQQPSNPSSLPNPQQPTSADFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGAGGAVADPATDHLFASSPVPAHFLHPATRPNSDHFLPFVPVPALHHHQQQQQQMAAAAQYHRQVGHFGSPPNGHFENPFMSRPNLQRMGGGGGGPVHNHHSVSGYVEDMESANAASGGRKVLTLFPTGDD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01393 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 163 IPR017930 -
Phco2g01393 309 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 268 IPR044841 GO:0003700|GO:0006355
Phco2g01393 309 Gene3D - 104 166 - -
Phco2g01393 309 MobiDBLite consensus disorder prediction 1 106 - -
Phco2g01393 309 FunFam Two-component response regulator 103 166 - -
Phco2g01393 309 MobiDBLite consensus disorder prediction 42 89 - -
Phco2g01393 309 MobiDBLite consensus disorder prediction 1 18 - -
Phco2g01393 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 160 IPR006447 GO:0003677
Phco2g01393 309 Pfam Myb-like DNA-binding domain 111 159 IPR001005 -
Phco2g01393 309 SUPERFAMILY Homeodomain-like 104 164 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01393 Phco-Chr2 43015481 43016410 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco2g01393 Myb_DNA-binding 2.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01393 2 43015481 43016410 Phco2g01393 2 43015481 43016410 ECH