Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01358 ATGGAACACCATTTTAGTCAAGACGCTTCACCTGCATCTGGGTCCTTTGATAAGACTAGGGTTTTGAATGTGAAGCCATTAAGAACACTTGTTCCTGTGTTCCCTTCACCATCTAATCCTGCTTCATCTTCAACTCCACAAGGGGGTGCCCCATTTGTCTGTGTTTCACCTTCTGGTCCTTTCCCTTCTGGGGTTGCACCCTTCTATCCATTCTTCATCTCCCCTGAATCCCAGAGGCTCTCTGAGCAGAATGCAGAAACGCCCACTGGTCAACGTGTGCCTGCTGCTCCAATTTCTACTGCTCCTGCTGCTCCGATTTCTACGGCAGTTCCAATTAATTCATTTCGGACGCCAACTGGAGCTACAAATGGTGATGTGGGCACATCGCGAAGGAATACCCGAAGTTGGGGACAGGTCACAGAGGAAGATGGTTACAGTAATGTTGTGATAGAGGAAGTTGATGCAGATGCACGAACTAGGAGTGGAAGGTCAAAGCGCAAGTTGCAGAAGAAGATAAAGGGACCGCAGACTGGTGTTTTTGGGGATGTTGATCCAGATGCAGTGGCTGCTGATATTCTCAAGTCACTTAACCCATTGGTTTTTGAGGTACTAAATCAACCGGAAGGTAGCAGGGACTCAGTTGCATATACACTCATGATATATGAAGTAATGCGAAGAAAGCTTGGACAAATTGAGGATTCAAATAGGGCCGCTAACTCTGGAGCAAAACGACCTGATTTGAAGGCAGGTGCACTTATGATGAATAAAGGGATTCGGACCAACAGCAAGAAACATATTGGATCTGTGTCTGGTGTTGAGATTGGGGATATTTTCTTTTTCAGATTTGAATTGTGCTTAGTGGGTTTACATGCACCTTCTATGGCTGGAATTGATTATATCGGTACCAAAACCAGTCAAGAGGAAGAGCCCTTAGCCGTAAGTATTGTCTCATCTGGAGGGTATGAAGATGATGTGGAGGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGGGTTAACCGTGACAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGAAATCTTGCTTTGGATAATAGTGCCCGTAGAGGTAATGAAGTGAGGGTAATTAGGGGTTTGAAGGATTTGCATCATCCAACTGGGAAGGTATATGTCTATGATGGCCTTTACAAGATTCAAGATTCCTGGGTGGACAAAGCAAAATCTGGTTTCAATGTTTTCAAGCATAAATTAGGAAGGTTGCCTGGACAGCCTCCAGCATATATGGTCTGGAAATCCATTCAACAATGGACTGAGAAATCTGCTTCAAGAGCTGGGGTTATATTGCCTGATCTTACTTCTGGGGCTGAAAAAGTACCTGTTTGTCTTGTGAATGATGTTGATGCTGAGAAGGGCCCTGCATATTTCACTTACCTCCCAAATCTTAAAAATTTAAGGCCAAGTCCTCCGTTGGAATCCTCTACTGGATGTTCTTGTGTTGGTGGATGCCAACCTAACAATTCTAACTGTCCTTGTGTTCAAAAGAATGGAGGCTATCTACCATATTCTTCAGCTTCGTTAATTGCAGACCTAAAATCTGTTATATATGAGTGTGGTCCTTCTTGTCAATGTCCTTCTAATTGCCGAAACCGGGTTTCTCAAGGTGGCTTGAAGTTTCGTTTGGAGGTTTATAAAACCAAGAATAAAGGATGGGCTCTTAGATCATGGGATGCTATTAGAGCTGGATCTTTCATATGTGAGTATGCAGGGGAAGTCATAGATAGTGCCAGAGTGGAGGAGGAGCTTGGTGGTGACAATCTTGATGATTACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAGTTTTTCCGGCTGACACTGAAGCTCCAAAAATCCCATCCCCCCTATATATCTCAGCAATATATGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCAGTCATACATGATAATAAGAATATGTCAGATCTCCACATTGCTTTCTATGCAATTAGACATATCCCTCCTATGATGGAGTTAACTTATGATTATGGGACGGTTCTTCCTCTCAAAGCAGGTCATAGGAAAAAGAAATGCTTATGTGAATCTGTGAAATGCAGGGGTTACTTTTGTTAA 2145 0.434 MEHHFSQDASPASGSFDKTRVLNVKPLRTLVPVFPSPSNPASSSTPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNAETPTGQRVPAAPISTAPAAPISTAVPINSFRTPTGATNGDVGTSRRNTRSWGQVTEEDGYSNVVIEEVDADARTRSGRSKRKLQKKIKGPQTGVFGDVDPDAVAADILKSLNPLVFEVLNQPEGSRDSVAYTLMIYEVMRRKLGQIEDSNRAANSGAKRPDLKAGALMMNKGIRTNSKKHIGSVSGVEIGDIFFFRFELCLVGLHAPSMAGIDYIGTKTSQEEEPLAVSIVSSGGYEDDVEDGDVLIYSGQGGVNRDKGASDQKLERGNLALDNSARRGNEVRVIRGLKDLHHPTGKVYVYDGLYKIQDSWVDKAKSGFNVFKHKLGRLPGQPPAYMVWKSIQQWTEKSASRAGVILPDLTSGAEKVPVCLVNDVDAEKGPAYFTYLPNLKNLRPSPPLESSTGCSCVGGCQPNNSNCPCVQKNGGYLPYSSASLIADLKSVIYECGPSCQCPSNCRNRVSQGGLKFRLEVYKTKNKGWALRSWDAIRAGSFICEYAGEVIDSARVEEELGGDNLDDYIFDSTRIYQQLEVFPADTEAPKIPSPLYISAIYEGNVARFMNHSCSPNVLWRPVIHDNKNMSDLHIAFYAIRHIPPMMELTYDYGTVLPLKAGHRKKKCLCESVKCRGYFC 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01358 714 Gene3D - 250 434 IPR036987 -
Phco2g01358 714 Pfam SET domain 563 688 IPR001214 GO:0005515
Phco2g01358 714 SUPERFAMILY PUA domain-like 249 432 IPR015947 -
Phco2g01358 714 ProSiteProfiles YDG domain profile. 267 413 IPR003105 -
Phco2g01358 714 Pfam Pre-SET motif 446 544 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco2g01358 714 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 123 706 - -
Phco2g01358 714 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 128 713 IPR025794 GO:0016571
Phco2g01358 714 SUPERFAMILY SET domain 428 694 IPR046341 -
Phco2g01358 714 ProSiteProfiles Post-SET domain profile. 698 714 IPR003616 -
Phco2g01358 714 Pfam SAD/SRA domain 265 417 IPR003105 -
Phco2g01358 714 SMART preset_2 442 536 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco2g01358 714 MobiDBLite consensus disorder prediction 111 133 - -
Phco2g01358 714 SMART G9a_1 262 417 IPR003105 -
Phco2g01358 714 Gene3D SET domain 435 713 IPR046341 -
Phco2g01358 714 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 250 432 - -
Phco2g01358 714 ProSiteProfiles Pre-SET domain profile. 488 549 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco2g01358 714 ProSiteProfiles SET domain profile. 552 688 IPR001214 GO:0005515
Phco2g01358 714 SMART set_7 552 694 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01358 Phco-Chr2 42460390 42462534 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco2g01358 SAD_SRA 1.3e-48 CL0178