Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01330 ATGAGTGAACTTGGATGTTATACTGTAATTGCTAGTAGTCGGCGGCATAGGAATTTAATCAAGATTGAGAGGATTTCCTGTATGCTGGGAATTTATTTTGCTTTTTGCATGATTCAATTCCCGCAAAATTTTACAACGCCTCTTTTGCCTCCGCCAATTCAATTCCTCGTCGTTTTCTCCAATTCCAATGCGTCCATTTTGGGCTGGAGAATGAGTTCTCCCAACTCTTCCCTTATCAGTTTCCTTAGATCTCTCTCCGAACCCTCCACAATCTCCGCGTTCGACTTCTTTCGTCCAATTTTAACAGTTCATTTTTTTTATGCTTTTTTTTCTTGTCAAATTGTAGTTCGTAATATAACTATGTATCACGCAAAGAAGTTTTCGTCAGCTAGCATGGTGCCCTATAAATCACAAGGTGGTGCTGAACAACTTGCAAATGTTGAGGTTTTGGGTGGATCTGCTGCTAAAAATGCCACACCTGCTGGAGGAAGTGGGAAGCAGCGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTACTTACCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAGAGAAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCACCGGGAATGCCAATCAACGATGCCTTAAGAATGCAGATGGAGGTACAGAAACGTCTTCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACTTTAACAACCTCAGAAACACTTCCTTTGTCGCATGATAAGCACACTCATCCCCACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCCCTTTGTCTCCACATAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTTCTTCCCATGTAAGAAAGACTGAACAAAAGAGTGACTGCAATGTTGGTCAGTTGGATCCAAATTTGTATGATGATACTGGGTTTGGATTTGATTTGGAGACAAAAAAGGATGAACATAAGGAGAGTGGACAATAA 1194 0.4129 MSELGCYTVIASSRRHRNLIKIERISCMLGIYFAFCMIQFPQNFTTPLLPPPIQFLVVFSNSNASILGWRMSSPNSSLISFLRSLSEPSTISAFDFFRPILTVHFFYAFFSCQIVVRNITMYHAKKFSSASMVPYKSQGGAEQLANVEVLGGSAAKNATPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPLSHDKHTHPHSEASGSSDALASPLSPHKKQRIDDGSKDGFTSSHVRKTEQKSDCNVGQLDPNLYDDTGFGFDLETKKDEHKESGQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01330 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 164 342 IPR044848 GO:0003700
Phco2g01330 397 Pfam Myb-like DNA-binding domain 169 219 IPR001005 -
Phco2g01330 397 MobiDBLite consensus disorder prediction 339 365 - -
Phco2g01330 397 SUPERFAMILY Homeodomain-like 165 220 IPR009057 -
Phco2g01330 397 NCBIfam myb-like DNA-binding domain, SHAQKYF class 166 221 IPR006447 GO:0003677
Phco2g01330 397 MobiDBLite consensus disorder prediction 226 243 - -
Phco2g01330 397 FunFam Myb family transcription factor 165 223 - -
Phco2g01330 397 MobiDBLite consensus disorder prediction 309 397 - -
Phco2g01330 397 MobiDBLite consensus disorder prediction 382 397 - -
Phco2g01330 397 Gene3D - 165 224 - -
Phco2g01330 397 MobiDBLite consensus disorder prediction 226 256 - -
Phco2g01330 397 Coils Coil 257 277 - -
Phco2g01330 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 223 IPR017930 -
Phco2g01330 397 Pfam MYB-CC type transfactor, LHEQLE motif 254 300 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01330 Phco-Chr2 41725908 41730698 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco2g01330 Myb_DNA-binding 4.6e-06 CL0123