Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01303 ATGGGGAGACCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAGGATATCATCCTTGTCACATACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCCCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTTCTGGGTAACAAATGGGCAGCCATAGCTTCCTATCTTCCACAAAGAACAGATAATGATATCAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTTAAGAAATTTCAAGCTGCCTTAGATCCTCACTCAGCATCAGACTCAACAATCAGTGGACAGTATCTACCAAAGAGCTTTAACGACAGAAGAAGTTTAGACATGAGCAGCAACAGTGACCATGTCTCATCCGCTAGGCTTAGTCAGTCTCAGTCCTCCACCTATGCCTCAAGCACTGAGAACATCTCAAGACTCTTGGAAGGTTGGATGAGATCTTCCCCAAAGGCACTCAAGAGATCCCAAGATGAAGAGCTCCAAAGCATTGATGATGATAATAACAACAACAACTTTGAAAACACTAATAAGCTGGTGAAGTGTGCATCGCTGCCTGCTTTGAACCTTCATCATCAGCGCAAAAGAAACAAAGATGAGCAAGAGGGTGTCGTAGATATAGTTTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACGTGCGATTCCATGCCTGACAAGAGTCCTGAAGCTGCTGCCGAATCTTCTCATGAAGTCTTTTGTGAAGAGAGGATTAGGCAAAAATCTGAGAACAACAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTAGATGAAAGCGTTGGTCAAGTGGAGGAGATGATGGAGTTATCTCCAATGTTCTAA 999 0.4344 MGRPPCCDKVGIKKGPWTPEEDIILVTYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHSASDSTISGQYLPKSFNDRRSLDMSSNSDHVSSARLSQSQSSTYASSTENISRLLEGWMRSSPKALKRSQDEELQSIDDDNNNNNFENTNKLVKCASLPALNLHHQRKRNKDEQEGVVDIVSHEEFDSILSFENLNNAAWDKSTCDSMPDKSPEAAAESSHEVFCEERIRQKSENNSAPPLSFLEKWLLDESVGQVEEMMELSPMF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01303 332 CDD SANT 69 112 IPR001005 -
Phco2g01303 332 Gene3D - 13 66 - -
Phco2g01303 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Phco2g01303 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco2g01303 332 CDD SANT 16 61 IPR001005 -
Phco2g01303 332 FunFam MYB-related transcription factor 13 66 - -
Phco2g01303 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco2g01303 332 SMART sant 13 63 IPR001005 -
Phco2g01303 332 SMART sant 66 114 IPR001005 -
Phco2g01303 332 MobiDBLite consensus disorder prediction 192 211 - -
Phco2g01303 332 MobiDBLite consensus disorder prediction 144 170 - -
Phco2g01303 332 FunFam Transcription factor MYB60 68 136 - -
Phco2g01303 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Phco2g01303 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Phco2g01303 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco2g01303 332 Gene3D - 69 133 - -
Phco2g01303 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco2g01303 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01303 Phco-Chr2 41146801 41148183 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g01303 Myb_DNA-binding 2.9e-15 CL0123