Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01290 ATGGAAGATGAGAGGCAGAAAGAGGCAAAGAGTCCAAGGCATGGCCCCGAGAAGAGTGAAGCGGTTCGGTCAAGGTGGACTCCGAAGCCGGAACAAATTCTCATACTCGAATCCATCTTCAACAGTGGCATGGTGAATCCTCCAAAAGATGAAACCGTCAGAATAAGGAAACTGCTTGAGAAATTCGGCACTGTGGGTGACGCCAACGTCTTCTACTGGTTCCAGAACCGACGCTCCAGATCCCGCCGCCGCCAGCGCCAGATGATGCAGCAGGCAGCCGCCACCGCTGCTGCGGTTAACCAGCCTCAGCCACAGCCTCAGCCTCATTGTCTTGTTGGTGGTGGTGCAATTCAGCATGATCATCATAATCAGGTCAACCTTGTTGCAAGTGAAAGTGCTACTTCAAACATGGGTCTTGGTTCTTGTGTTTCTTATGATCTCCTAGGTGGTTCCTCTTCTTCATCATGTAGTGGTGGTGGACAACAAGGCATGGCTGGTTTCTTTTCTGTATCTTCTCCTCAAATGGGCTTTCCTGAAATAATTGACCATACCTCACCTGCATCATCAGTTTTGTTCCCTCCTTTTGATCCAAATTTGAGCTTCCAGACTGGATATGGGGGCACCAATATTTCAGCATTCATCACAGTCTTTATCAATGGGATTGCAACAGAACTTCCAAAGGGACCAATAGACATCAAGACAGTGTTTGGAGAAGATCTTATGTTAGTTCATTCCTCTGGAGTGCCAATTCTCACCAATGAATTTGGACTCTTGATGCAGAACCTTCAGCATGGAGAAAGCTACTTTCTGTGGAAAGTGATGAGACATAGTGCTGCTGGATGCCGGTTTCATCTCCAAAAGAATTCAAAAAACTTGGCTTCACAATTTGATGCTACAAAAGTGGGATTAAATATCACTCCATGCATATTAACTGCTACAAGTTTTTAG 948 0.4599 MEDERQKEAKSPRHGPEKSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQMMQQAAATAAAVNQPQPQPQPHCLVGGGAIQHDHHNQVNLVASESATSNMGLGSCVSYDLLGGSSSSSCSGGGQQGMAGFFSVSSPQMGFPEIIDHTSPASSVLFPPFDPNLSFQTGYGGTNISAFITVFINGIATELPKGPIDIKTVFGEDLMLVHSSGVPILTNEFGLLMQNLQHGESYFLWKVMRHSAAGCRFHLQKNSKNLASQFDATKVGLNITPCILTATSF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01290 315 SMART HOX_1 21 88 IPR001356 GO:0003677
Phco2g01290 315 MobiDBLite consensus disorder prediction 1 26 - -
Phco2g01290 315 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Phco2g01290 315 FunFam WUSCHEL-related homeobox 11 23 90 - -
Phco2g01290 315 Gene3D - 23 90 - -
Phco2g01290 315 MobiDBLite consensus disorder prediction 1 25 - -
Phco2g01290 315 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Phco2g01290 315 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Phco2g01290 315 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 270 IPR044558 GO:0003700|GO:0048830
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01290 Phco-Chr2 40843975 40847197 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Phco2g01290 Homeodomain 1.4e-12 CL0123