Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01259 ATGAACAACACAGCGAGTTCAGAATCAGTGATAGAGATTGTAAAGGGTTCACATGAGTTCAAGGTAAAGGGATATTCTCTGGTGAAGGGAATTGGAGTGGGAAAATTTATTGCAAGTGAGACGTTCAATGTTGGAGGGTATGAATGGGCTATATACTTTTACCCTGATGGTATAGACACCCAAGAAAACGCCGCGGTTTATGTCTCGGTTTTCGTTGTGCTTCTTTCCAATGCAAATGATGTTCGTGCTAAGTTTGAATTGGCCATGCATGACCAAGGAGGGAGCGATGAACACTTTGTCCTTGGTCACTTTAATGGCACCCTTGGAACTGACCCTTACACTCTATCAACCGGAGAAATGTGGGGGATTAGGCGTTTTTACAAACGTTTTCACCTTGAACACTCAATGTATCTCACAGATGATTGTCTACAAGTAAATTGCACTGTTGGGGTTTTGCCCACCACCCTAGATAAATCTATGACAATAGAGGTTCCTGAGTCTAGCATTGCAGTAAATTTTGGGATGTTGTTTGAAGATGAACAATCATCTGATGTTACTTTTTGTGTTGGAGGAAACAAGTTTTATGCGCATAAGATTGTATTGGCAGCTAGATCAAGTGTGTTTAAAACTCAGTTTTTCAATGAAACTGAGAAGGTTGATAGAGAGATACTTGTTAATGACATGGAACCTAAGGTTTTCAAGGCATTACTTCACTTTATTTACAAAGATACTCTTATGGAAGATGAAGAACTCCATTTGTCAGTGTCTTCAACCATGGCTTCTCTGTCAAAGTTGTATGTGACAAAGTTGCTGGCTGCTGCACATAAGTATGAATTACCAAGGCTAAAGTTGATGTGCGAATCTGTACTTTGCAAACATATATCTATAAATTCTGTTGCTCAAATTCTGGTTATTTCTGATTGTTACGATGCCACCCAATTGAAGTCCATGTGTCTGCAATTCTCAACAGAAAATCTTGATGCTGTACTGAGATCTGATGGTTTCAAGCATCTTAAGAAAAAATGTCCAAATCTTCAATATGAACTGTTAAAGACTGTGGCAGCAGAAATTGAGTGTGCCAAATCTTCTCATGTTGTTGACTGTGATGAAACACATGAGCCAAATGAAATAGAAACTGAAAGCACAAGTTATAATCCTTCCAGTGACGAAGAAAACCATCTGGGTTGGTAG 1191 0.3904 MNNTASSESVIEIVKGSHEFKVKGYSLVKGIGVGKFIASETFNVGGYEWAIYFYPDGIDTQENAAVYVSVFVVLLSNANDVRAKFELAMHDQGGSDEHFVLGHFNGTLGTDPYTLSTGEMWGIRRFYKRFHLEHSMYLTDDCLQVNCTVGVLPTTLDKSMTIEVPESSIAVNFGMLFEDEQSSDVTFCVGGNKFYAHKIVLAARSSVFKTQFFNETEKVDREILVNDMEPKVFKALLHFIYKDTLMEDEELHLSVSSTMASLSKLYVTKLLAAAHKYELPRLKLMCESVLCKHISINSVAQILVISDCYDATQLKSMCLQFSTENLDAVLRSDGFKHLKKKCPNLQYELLKTVAAEIECAKSSHVVDCDETHEPNEIETESTSYNPSSDEENHLGW 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01259 396 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 13 152 IPR008974 GO:0005515
Phco2g01259 396 ProSiteProfiles BTB domain profile. 183 249 IPR000210 GO:0005515
Phco2g01259 396 Gene3D - 294 365 - -
Phco2g01259 396 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 6 348 IPR045005 GO:0016567
Phco2g01259 396 Gene3D Potassium Channel Kv1.1; Chain A 159 288 IPR011333 -
Phco2g01259 396 SMART BTB_4 183 294 IPR000210 GO:0005515
Phco2g01259 396 Pfam BTB/POZ domain 175 293 IPR000210 GO:0005515
Phco2g01259 396 SUPERFAMILY TRAF domain-like 13 155 - -
Phco2g01259 396 SUPERFAMILY POZ domain 160 294 IPR011333 -
Phco2g01259 396 CDD BTB_POZ_BPM_plant 169 291 - -
Phco2g01259 396 CDD MATH 16 149 IPR002083 GO:0005515
Phco2g01259 396 MobiDBLite consensus disorder prediction 370 396 - -
Phco2g01259 396 ProSiteProfiles MATH/TRAF domain profile. 15 149 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01259 Phco-Chr2 39859829 39861294 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco2g01259 BTB 9.2e-27 CL0033