Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01254 ATGGCTCGTCGTTCCGACATGGCGATTAACAGGCTGACAGCAGGGCGTGGGCGTGGGCGTGGCCGTAGGAGAACTGTGAGGCCTAGCAGCAGTTCTGAACCGGCGACGGAGACAGTATTCGGGACTCACACGTTGGAGATAAAGGGTTACTCTTTGACAAAGGGAATGGGCGTTGGGAAATACATTGCAAGCAAGAAGTTCAGCATAGGAGGGTATGAATGGGTCATATACTTCTACCCAGATGGCAAATACTCTAAAGATAACTCCTCTTATGTCTCTGTCTTCCTCACACTCTTGTCCATGGCCACTCGTGTTAGAGTCTTTTATGAACTCAACTTGCTCGATCACAGAGGAAAACGTAAGCGCCATGCTGGTAGCCACTTCGATCACTCCCTCGAAGGGGGACCCATCATTTTCAGAAGAGGTGGCTGCATGTGGGGCTACAACCAGTTTTACAATCGAAAAGATCTTGAGGATTCGGCTTTTCTGATGGATGACACCTTGAAGATTAAGTGCACTATTGGTGTTGTGGTGACATTGAGCAGTGATTCTTCAAAGTTAAAGACAATAGAAGTTCCTGAGTCTGATATTGGGGCACATTTCGGGGCACTGTTAGATAGTGGGGCTTTTTCTGATGTTACTTTCTCAGTAGGTGGAGAAAAGTTTCATGCTCATAAGCTTGTCTTGGCTGCTCGCTCAAAACTGTTTCTAACTGAGTTTGTCAATGGAGTGGAGAAGGATGAAGATGGTGACATAGTTGTTAATGACATTGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAAAGACTCTCTGATACAAGATGAAGAGCTTCATATGTCACGTTCATCTCTCTTTTCTTCGCTGTCTGAAACATTCCCTGCAAAGTTATTAGCAGCTGCAGAAAAGTTTGATTTATCAAGACTTAAGCTGATGTGTGAATCTATACTTTGCAGAGATATATCTATAGATTCTGTTGTCAGTATTTTACTTCTTGCTGATCGTAATCATGCAACTGAATTGAAGTTAACGTGTCTAAAATTTACTGTTCAACACCTTAAAGCTGTCATGCAATCTGAGGGTTACAAGTATCTTATTCAAAATCATCCATTGTTGCAAGCAGAAGTGCTCAAGACTTTGGTAGAATTTCAGGAGCCATTTATTGAAAAACCAAAGCATGAAATTGTGAACATCGAATCTTCAGAAGATGATGATCATTAA 1227 0.4205 MARRSDMAINRLTAGRGRGRGRRRTVRPSSSSEPATETVFGTHTLEIKGYSLTKGMGVGKYIASKKFSIGGYEWVIYFYPDGKYSKDNSSYVSVFLTLLSMATRVRVFYELNLLDHRGKRKRHAGSHFDHSLEGGPIIFRRGGCMWGYNQFYNRKDLEDSAFLMDDTLKIKCTIGVVVTLSSDSSKLKTIEVPESDIGAHFGALLDSGAFSDVTFSVGGEKFHAHKLVLAARSKLFLTEFVNGVEKDEDGDIVVNDIEPKVFKALLHFIYKDSLIQDEELHMSRSSLFSSLSETFPAKLLAAAEKFDLSRLKLMCESILCRDISIDSVVSILLLADRNHATELKLTCLKFTVQHLKAVMQSEGYKYLIQNHPLLQAEVLKTLVEFQEPFIEKPKHEIVNIESSEDDDH 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01254 408 SMART BTB_4 211 323 IPR000210 GO:0005515
Phco2g01254 408 FunFam BTB-POZ and math domain 1 187 317 - -
Phco2g01254 408 CDD MATH 41 174 IPR002083 GO:0005515
Phco2g01254 408 CDD BTB_POZ_BPM_plant 197 320 - -
Phco2g01254 408 ProSiteProfiles BTB domain profile. 211 278 IPR000210 GO:0005515
Phco2g01254 408 MobiDBLite consensus disorder prediction 1 36 - -
Phco2g01254 408 Pfam BTB/POZ domain 202 321 IPR000210 GO:0005515
Phco2g01254 408 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 40 178 IPR008974 GO:0005515
Phco2g01254 408 SUPERFAMILY POZ domain 190 321 IPR011333 -
Phco2g01254 408 Gene3D - 322 397 - -
Phco2g01254 408 Gene3D Potassium Channel Kv1.1; Chain A 187 317 IPR011333 -
Phco2g01254 408 SUPERFAMILY TRAF domain-like 39 178 - -
Phco2g01254 408 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 31 377 IPR045005 GO:0016567
Phco2g01254 408 ProSiteProfiles MATH/TRAF domain profile. 40 174 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01254 Phco-Chr2 39748943 39751815 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco2g01254 BTB 7.8e-25 CL0033