Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01177 ATGAACATGAATATGTGCCAAAATGTATCAGTTTCCTCTGAATGCCACCAAGAGCAGGTCTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTTCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGAGTTTGTTGAAGACTGCTTTTCAAGTCCCCCAAGCTTTGTATTGGGACCTGCCGGGGTTAAGACTACAAGCACAGGCACAAGCACCAACCCTTCTTCAGGCACATTGAAGAGGCCCCAACAAAATGAGTCTCCTTTGCAAAATTTTGCTGTGCCTGGAAAGGCCAGGAGCAAAAGGAAAAGGCTTTCAGCCCCTAGAACCAAGGACCCTTTAAGCATATGGTCACACCATTTGAACCCCCAAAATGAAGCCTTGAGTTCTGATCCTCCTCTGCTCAAACAGGCTTATTGGTTGGCTGACAGTGAACTCATTATGCCTAAGCCAAAGGAGGAGCAAGAAGTGAGCAAAGTGGATGGGGAAGTGGTGGAGAAGGGGGTAGTGATTATTGGCAAGGAAAGCTTTGGGGACTCTGAGCTTGAAGGTAGCAACGGTCAACAACCAATGCCAAGGAGGTGCACCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTTTGCAATGCATGTGGAGTTAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCCACTTTTGTAAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTGTTTACTCTTCCATTTCTAGTGAGCAGTAG 822 0.4818 MNMNMCQNVSVSSECHQEQVFAPSCSSSLDDLFSSQNTEVDVELEWLSEFVEDCFSSPPSFVLGPAGVKTTSTGTSTNPSSGTLKRPQQNESPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNEALSSDPPLLKQAYWLADSELIMPKPKEEQEVSKVDGEVVEKGVVIIGKESFGDSELEGSNGQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSVYSSISSEQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01177 273 Pfam GATA zinc finger 200 234 IPR000679 GO:0006355|GO:0043565
Phco2g01177 273 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 258 - -
Phco2g01177 273 SMART GATA_3 194 248 IPR000679 GO:0006355|GO:0043565
Phco2g01177 273 FunFam GATA transcription factor 190 273 - -
Phco2g01177 273 ProSiteProfiles GATA-type zinc finger domain profile. 194 230 IPR000679 GO:0006355|GO:0043565
Phco2g01177 273 MobiDBLite consensus disorder prediction 65 122 - -
Phco2g01177 273 ProSitePatterns GATA-type zinc finger domain. 200 225 IPR000679 GO:0006355|GO:0043565
Phco2g01177 273 PANTHER GATA TRANSCRIPTION FACTOR 26 265 - -
Phco2g01177 273 MobiDBLite consensus disorder prediction 66 96 - -
Phco2g01177 273 CDD ZnF_GATA 199 246 IPR000679 GO:0006355|GO:0043565
Phco2g01177 273 Gene3D - 190 262 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01177 Phco-Chr2 37616341 37617462 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco2g01177 GATA 1.2e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01177 2 37616341 37617462 Phco2g01177 2 37616341 37617462 ECH
Phco2g01177 2 37616341 37617462 Phco5g01194 5 45469695 45471215 PCT